python

Package to manipulate alignment results (DNA sequence, bioinfo) such as blast and nucmer tsv outputs.

TimageTK (Tissue Image Toolkit) is a Python package dedicated to image processing of multicellular architectures, such as plants or animals. It is intended for biologists, modellers and computer scientists.

The library offers an array of tools for image enhancement, transformation, and feature extraction. From mathematical morphology to filtering algorithms and peak detection, they refine image data and assist in critical processing workflows for various analysis needs.

https://mosaic.gitlabpages.inria.fr/timagetk

Various tools to run scientific computer experiments.

Python library for controlling an Ozobot Evo robot via its Bluetooth connection.

Ozobot Evo control REST API

Geometric processing of vector drawings in python3

Correcting estimations of copepod volume from 2-dimensional images

New on-line polytope vertex search algorithm optimised for force and velocity polytope evaluation of serial robots. https://auctus-team.gitlabpages.inria.fr/people/antunskuric/papers/polytope_vertex_search

A Python driver for ANTLR4-generated code.

The tool, written in Python, of the implementation of the algorithm presented in FORMATS 2020 (ref: CMMJ2020) Long version paper: https://arxiv.org/pdf/2007.01815.pdf

This is a repository with examples of how to use pyomeca borbd and bioviz software for manipulation of musculoskeletal models.

An OpenAI Gym crop management environment for Reinforcement Learning (RL), based on the Decision Support System for Agrotechnology Transfer (DSSAT) crop model.

A new efficient polytope evaluation algorithm for feasible wrench analysis of the human musculoskeletal models. https://auctus-team.gitlabpages.inria.fr/people/antunskuric/papers/human_wrench_capacity

A repo demonstrating how to use python KDL library and anaconda.

Discrete Exterior Calculus library in Python mostly targeted toward multicellular tissue modeling.

documentation: https://oali.gitlabpages.inria.fr/dxtr/

This Python repository offers a way to perform a markerless kinematic analysis from multiple calibrated views as a unified workflow from an OpenPose input to an OpenSim result.

A tool for a numeric algorithm that computes an approximate values of the permissiveness function for general timed automata. For resource: see the chapter 6 of the thesis of Emily Clement (Section 6.1)

A simple example repository to start working with robotics toolbox in python encapsulated in an anaconda environment.

Analysis scripts and Cribble visual tool for FF4EuroHPC WP4.

Memetic Semantic for Symbolic Regression