Commits · master · Serpico / Deep Finder

Nov 27, 2023
- Update README.md : link to new repo · f924812e
  MOEBEL Emmanuel authored 1 year ago
  
  f924812e
May 25, 2022
- Merge branch 'fix-requirements-pycm' into 'master' · b009dc1d
  MOEBEL Emmanuel authored 2 years ago
  
  Add pycm to requirements Closes #2 See merge request !5
  b009dc1d
- Add pycm to requirements · 9aa2cfe9
  ARONSSOHN Constantin authored 2 years ago and MOEBEL Emmanuel committed 2 years ago
  
  9aa2cfe9
May 11, 2022
- Merge branch 'caronsso-master-patch-85792' into 'master' · 7742f824
  MOEBEL Emmanuel authored 2 years ago
  
  Update README.md See merge request !1
  7742f824
- Merge branch 'master' into 'master' · bde2348e
  MOEBEL Emmanuel authored 2 years ago
  
  Improve default behaviour, and fix bug where the default was set to shapes... See merge request !3
  bde2348e
- Improve default behaviour, and fix bug where the default was set to shapes... · 01b3103a
  ARONSSOHN Constantin authored 2 years ago and MOEBEL Emmanuel committed 2 years ago
  
  01b3103a
May 05, 2022
- Update README.md · 8f188c55
  ARONSSOHN Constantin authored 2 years ago
  
  8f188c55
May 02, 2022
- test_eval: minor modif · bc406425
  MOEBEL Emmanuel authored 2 years ago
  
  bc406425
- eval: cleaned up the code, and added a function to plot metrics wrt detection score · be983e47
  MOEBEL Emmanuel authored 2 years ago
  
  be983e47
Apr 29, 2022
- test_eval: cleaned up the script · 9cb81d3e
  MOEBEL Emmanuel authored 2 years ago
  
  9cb81d3e
- utils.eval: added Evaluator class · 398d9445
  MOEBEL Emmanuel authored 2 years ago
  
  398d9445
- test_eval: unit-test for Evaluator · 6fd7f28b
  MOEBEL Emmanuel authored 2 years ago
  
  6fd7f28b
Apr 13, 2022
- gui_target: corrected bug "AttributeError: 'str' object has no attribute... · 02f83aa3
  MOEBEL Emmanuel authored 2 years ago
  
  gui_target: corrected bug "AttributeError: 'str' object has no attribute 'shape'" that happened with shape strategy
  02f83aa3
Apr 11, 2022
- Update README.md · 5c9ced25
  ARONSSOHN Constantin authored 2 years ago
  
  5c9ced25
Feb 23, 2022
- added scipy to requirements · 1fa0e96f
  MOEBEL Emmanuel authored 3 years ago
  
  1fa0e96f
Nov 25, 2021
- README: added link for google group · 2a22f4e0
  MOEBEL Emmanuel authored 3 years ago
  
  2a22f4e0
Nov 19, 2021
- uncommented a line in seg_single_block · 87e079a3
  Emmanuel Moebel authored 3 years ago
  
  87e079a3
Nov 09, 2021
- Train: added self.loss argument. This makes it more easy to load custom losses. · 9a077c05
  MOEBEL Emmanuel authored 3 years ago
  
  9a077c05
Oct 27, 2021
- GUI train and cluster: replaced all ol.read_xml and ol.write_xml instances by ol.read and ol.write · 4b20c6cd
  MOEBEL Emmanuel authored 3 years ago
  
  4b20c6cd
- GUI annotation: now object lists can also be saves as excel files · 1af02d36
  MOEBEL Emmanuel authored 3 years ago
  
  1af02d36
- modified readme to update dependencies versions · a3eb2450
  Emmanuel Moebel authored 3 years ago
  
  a3eb2450
- deepfinder is now compatible and relies on tensorflow==2.6.0 · 7c781f44
  Emmanuel Moebel authored 3 years ago
  
  7c781f44
Sep 16, 2021
- new file header was in conflict with "#!/usr/bin/env python" of bin files. resolved now · fa6a0c2b
  MOEBEL Emmanuel authored 3 years ago
  
  v1.0
  
  fa6a0c2b
- modified the file headers · f88d9339
  MOEBEL Emmanuel authored 3 years ago
  
  f88d9339
May 20, 2021
- core, check_array_minsize : replaced =< by < in test for comparing tomosize and patchsize · 285d8356
  MOEBEL Emmanuel authored 3 years ago
  
  285d8356
May 11, 2021
- train : added sample_weights option (to be tested) · b6980931
  MOEBEL Emmanuel authored 3 years ago
  
  b6980931
Apr 15, 2021
- corrected small bug in segment.launch_single_block · 1d6bafb6
  MOEBEL Emmanuel authored 3 years ago
  
  1d6bafb6
- corrected small bug in segment.launch_single_block · e6d5312d
  MOEBEL Emmanuel authored 3 years ago
  
  e6d5312d
- corrected small bug in segment.launch_single_block · ccc05b8c
  MOEBEL Emmanuel authored 3 years ago
  
  ccc05b8c
- corrected small bug in segment.launch_single_block · 7f2e28b7
  MOEBEL Emmanuel authored 3 years ago
  
  7f2e28b7
Apr 13, 2021
- objl scale: added option to scale x,y,z idependently with different scale factors · a8bc31e1
  MOEBEL Emmanuel authored 3 years ago
  
  a8bc31e1
Apr 06, 2021
- gen sphere target: was shifted +1 compared to matlab script · a5478443
  MOEBEL Emmanuel authored 3 years ago
  
  a5478443
- read tiff vol: vol didnt have right orientation compared to mrc · bcd73f7f
  MOEBEL Emmanuel authored 3 years ago
  
  bcd73f7f
Mar 29, 2021
- added possibility to open tiff volumes. -> for now as comment · 814b1222
  MOEBEL Emmanuel authored 4 years ago
  
  814b1222
Mar 19, 2021
- utils.scoremaps.bin : corrected bug which made binning crash when scoremap had... · 0d6dbd2a
  MOEBEL Emmanuel authored 4 years ago
  
  utils.scoremaps.bin : corrected bug which made binning crash when scoremap had an odd size (eg 151,200,200). Replaces np.round by np.ceil
  0d6dbd2a
- display : corrected bug that was displaying wrong slice_zy when denoising button was pushed · ba4ad94d
  MOEBEL Emmanuel authored 4 years ago
  
  ba4ad94d
- annotate: added -scipion option to hide 'load objl' button when DeepFinder is opened by Scipion · 690bb31a
  MOEBEL Emmanuel authored 4 years ago
  
  690bb31a
Mar 10, 2021

core.utils: get_bootstrap_idx · b1bdb635

MOEBEL Emmanuel authored 4 years ago

corrected a bug that happened when Nclass1=1 and Nclass2=X
ValueError: 'a' must be greater than 0 unless no samples are taken
solution was: instead of np.squeeze(x) just do x[0]

b1bdb635

Feb 26, 2021
- add bin annotate · c06fcb9a
  MOEBEL Emmanuel authored 4 years ago
  
  c06fcb9a
Jun 25, 2020

read_array: added .rec option. Absence of this option caused error:... · 71e681a6

MOEBEL Emmanuel authored 4 years ago

read_array: added .rec option. Absence of this option caused error: UnboundLocalError: local variable 'array' referenced before assignment

71e681a6

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