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Created with Raphaël 2.2.027Nov25May115229Apr131123Feb25Nov19927Oct16Sep20May1115Apr13629Mar191026Feb25Jun28May2614530Apr29282724232217161510976331Mar30262523201817131121Feb141312530Jan292823222120161598719Dec17168Nov612Jul28Mar20Update README.md : link to new repomastermasterMerge branch 'fix-requirements-pycm' into 'master'Add pycm to requirementsMerge branch 'caronsso-master-patch-85792' into 'master'Merge branch 'master' into 'master'Improve default behaviour, and fix bug where the default was set to shapes...Update README.mdtest_eval: minor modifeval: cleaned up the code, and added a function to plot metrics wrt detection scoretest_eval: cleaned up the scriptutils.eval: added Evaluator classtest_eval: unit-test for Evaluatorgui_target: corrected bug "AttributeError: 'str' object has no attribute 'shape'" that happened with shape strategyUpdate README.mdadded scipy to requirementsREADME: added link for google groupuncommented a line in seg_single_blockTrain: added self.loss argument. This makes it more easy to load custom losses.GUI train and cluster: replaced all ol.read_xml and ol.write_xml instances by ol.read and ol.writeGUI annotation: now object lists can also be saves as excel filesmodified readme to update dependencies versionsdeepfinder is now compatible and relies on tensorflow==2.6.0new file header was in conflict with "#!/usr/bin/env python" of bin files. resolved nowv1.0v1.0modified the file headerscore, check_array_minsize : replaced =< by < in test for comparing tomosize and patchsizetrain : added sample_weights option (to be tested)corrected small bug in segment.launch_single_blockcorrected small bug in segment.launch_single_blockcorrected small bug in segment.launch_single_blockcorrected small bug in segment.launch_single_blockobjl scale: added option to scale x,y,z idependently with different scale factorsgen sphere target: was shifted +1 compared to matlab scriptread tiff vol: vol didnt have right orientation compared to mrcadded possibility to open tiff volumes. -> for now as commentutils.scoremaps.bin : corrected bug which made binning crash when scoremap had an odd size (eg 151,200,200). Replaces np.round by np.ceildisplay : corrected bug that was displaying wrong slice_zy when denoising button was pushedannotate: added -scipion option to hide 'load objl' button when DeepFinder is opened by Scipioncore.utils: get_bootstrap_idxadd bin annotateread_array: added .rec option. Absence of this option caused error: UnboundLocalError: local variable 'array' referenced before assignment