add bin annotate

bin/annotate

+#!/usr/bin/env python
+
+import os
+import sys
+from os.path import dirname, abspath, join, basename
+import argparse
+
+parser = argparse.ArgumentParser(description='Annotate a tomogram.')
+parser.add_argument('-t', action='store', dest='path_tomo', help = 'path to tomogram')
+parser.add_argument('-o', action='store', dest='path_objl', help = 'output path for object list')
+args = parser.parse_args()
+
+# Set deepfindHome to the location of this file
+deepfindHome = dirname(abspath(__file__))
+deepfindHome = os.path.split(deepfindHome)[0]+'/'
+
+gui_folder = 'pyqt/annotation/'
+gui_script = 'gui_annotation.py'
+
+gui_options = ''
+if args.path_tomo != None:
+    gui_options += ' -t ' + args.path_tomo
+if args.path_objl != None:
+    gui_options += ' -o ' + args.path_objl
+
+cmd = 'cd ' + deepfindHome + gui_folder + ' ; python ' + gui_script + gui_options
+
+os.system(cmd)
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