Commits · 475077e75efccad7428b362d9773fbcb44520af7 · LUISELLI Juliette / aevol-eukaryotes · GitLab

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Apr 08, 2024
- TMP complexify recombination stats · 475077e7
  LUISELLI Juliette authored 1 year ago
  
  475077e7
- TMP default non-coding computation · 119cc6e5
  LUISELLI Juliette authored 1 year ago
  
  119cc6e5
- record chrsm B kinda separately · d3ffd486
  LUISELLI Juliette authored 1 year ago
  
  d3ffd486
- record json for both chrsm · d8fb14d8
  LUISELLI Juliette authored 1 year ago
  
  d8fb14d8
- TMP fix bad assert at VectorFuzzy · 794704e7
  LUISELLI Juliette authored 1 year ago
  
  794704e7
- Condition saving of population stats to pop_stats_ instead of __EUKARYOTE · b6bd8bb2
  LUISELLI Juliette authored 1 year ago
  
  b6bd8bb2
- retrieving pop_stats_ in aevol 7 · 47602f70
  LUISELLI Juliette authored 1 year ago
  
  47602f70
- Loading pop_stats_ to exp_s to save it · cbc5b808
  LUISELLI Juliette authored 1 year ago
  
  cbc5b808
- reading file to load POP_STATS to ParamValues · 903cd367
  LUISELLI Juliette authored 1 year ago
  
  903cd367
- Adding pop_stats param to ParamValues · 4824a66e
  LUISELLI Juliette authored 1 year ago
  
  4824a66e
- actually writing the pop stats during the simulation · e8541cc8
  LUISELLI Juliette authored 1 year ago
  
  e8541cc8
- Changing the data we record in eukaryote mode · 4ac06a66
  LUISELLI Juliette authored 1 year ago
  
  4ac06a66
- Computes ONLY the actually used non-coding value · 514ba9b3
  LUISELLI Juliette authored 1 year ago
  
  514ba9b3
- FIX: a lagging protein can end on the very first base of the genome · 13116325
  LUISELLI Juliette authored 1 year ago
  
  13116325
- allowing to create random individuals at create · 4cf3d40e
  LUISELLI Juliette authored 1 year ago
  
  4cf3d40e
- fix undefined var in prok mode · 6ea07b20
  LUISELLI Juliette authored 1 year ago
  
  6ea07b20
- fix bad position to count the nb of recombinations, and fix array size · 06d8151b
  LUISELLI Juliette authored 1 year ago
  
  06d8151b
- Correctly read and write the ReplicationReport in the eukaryotic case · deec7447
  LUISELLI Juliette authored 1 year ago
  
  deec7447
- adapt the init() of ReplicationReport to the eukaryotic case · 3cccb8a0
  LUISELLI Juliette authored 1 year ago
  
  3cccb8a0
- adapt stats computation to fit both eukaryotic and prokaryotic case in ReplicationReport · 3fa3dda5
  LUISELLI Juliette authored 1 year ago
  
  3fa3dda5
- add nb_genes_activ function to Individual_7 · 69ebb8f3
  LUISELLI Juliette authored 1 year ago
  
  69ebb8f3
- add nb_genes_inhib to Individual_7 · 45414c58
  LUISELLI Juliette authored 1 year ago
  
  45414c58
- add nb_func_genes to Individual_7 · 9cbebadc
  LUISELLI Juliette authored 1 year ago
  
  9cbebadc
- add nb_coding_RNAs function to Individual_7 · 4a4b16a7
  LUISELLI Juliette authored 1 year ago
  
  4a4b16a7
- add nb_non_coding_RNAs function to Individual_7 · d59b6f18
  LUISELLI Juliette authored 1 year ago
  
  d59b6f18
- add dna_length function to Individual_7 · f2b5d962
  LUISELLI Juliette authored 1 year ago
  
  f2b5d962
- add informations to Individual_7 to be able to reconstruct from the Tree · ddbfe36c
  LUISELLI Juliette authored 1 year ago
  
  ddbfe36c
- Use correct NewIndivEvent at run time in ExpManager_7 · 03d1d8af
  LUISELLI Juliette authored 1 year ago
  
  03d1d8af
- adapt NewIndivEvent to the eukaryotic case · 499d916b
  LUISELLI Juliette authored 1 year ago
  
  499d916b
- remove unadapted watch for new Individuals in the eukaryotic case · f968fdcc
  LUISELLI Juliette authored 1 year ago
  
  f968fdcc
- Record recombinations at run time in ExpManager_7 · 60c44687
  LUISELLI Juliette authored 1 year ago
  
  60c44687
- Record recombinations_ in the Tree (from DnaReplicationReport) · 8a616bc8
  LUISELLI Juliette authored 1 year ago
  
  8a616bc8
- Correctly compute nb of recombinations_ in DnaReplicationReport · 2f01b85a
  LUISELLI Juliette authored 1 year ago
  
  2f01b85a
- correctly clone recombinations_ in DnaReplicationReport · 3483155c
  LUISELLI Juliette authored 1 year ago
  
  3483155c
- add function add_recomb to DnaReplicationReport · 39512c6a
  LUISELLI Juliette authored 1 year ago
  
  39512c6a
- add recombinations_ to DnaReplicationReport · 24d13a0d
  LUISELLI Juliette authored 1 year ago
  
  24d13a0d
- Create the Recombination mutation (to save in the Tree) · cb0a1fd3
  LUISELLI Juliette authored 1 year ago
  
  cb0a1fd3
- Add RECOMB mutation type · 25376c39
  LUISELLI Juliette authored 1 year ago
  
  25376c39
- save and retrieve chrsm_ information to Tree for Small Insertions · 84c36601
  LUISELLI Juliette authored 1 year ago
  
  84c36601
- save and retrieve chrsm_ information to Tree for Small Deletions · 364497e1
  LUISELLI Juliette authored 1 year ago
  
  364497e1