add function add_recomb to DnaReplicationReport

src/libaevol/io/DnaReplicationReport.cpp

@@ -135,6 +135,15 @@ void DnaReplicationReport::add_mut(Mutation* mut) {
   }
 }
 
+#ifdef __EUKARYOTE
+void DnaReplicationReport::add_recomb(Mutation* recomb){
+  std::unique_ptr<const Recombination> crecomb = nullptr;
+  crecomb = std::make_unique<const Recombination>(static_cast<Recombination&>(*recomb));
+  recombinations_.push_back(std::move(crecomb));
+  nb_mut_[recomb->mut_type()]++;
+}
+#endif
+
 void DnaReplicationReport::add_local_mut(Mutation* mut) {
   assert(mut->is_local_mut());
   std::unique_ptr<const LocalMutation> cmut = nullptr;
@@ -262,6 +271,9 @@ void DnaReplicationReport::compute_stats()
   nb_mut_[INV]    = 0;
   nb_mut_[INS_HT] = 0;
   nb_mut_[REPL_HT]= 0;
+  #ifdef __EUKARYOTE
+  nb_mut_[RECOMB] = 0;
+  #endif
 
   for (const auto& ht : ht_) {
     assert(ht->mut_type() == INS_HT or

src/libaevol/io/DnaReplicationReport.h

@@ -88,6 +88,9 @@ class DnaReplicationReport {
   void add_local_mut(Mutation* mut);
   void add_rear(Mutation* mut);
   void add_HT(Mutation* mut);
+  #ifdef __EUKARYOTE
+  void add_recomb(Mutation* mut);
+  #endif
 
   void clear();