############################################################################### # # Aevol - An in silico experimental evolution platform # ############################################################################### # # Aevol is a digital genetics model: populations of digital organisms are # subjected to a process of selection and variation, which creates a # Darwinian dynamics. # . # By modifying the characteristics of selection (e.g. population size, # type of environment, environmental variations) or variation (e.g. # mutation rates, chromosomal rearrangement rates, types of # rearrangements, horizontal transfer), one can study experimentally the # impact of these parameters on the structure of the evolved organisms. # In particular, since Aevol integrates a precise and realistic model of # the genome, it allows for the study of structural variations of the # genome (e.g. number of genes, synteny, proportion of coding sequences). # . # The simulation platform comes along with a set of tools for analysing # phylogenies and measuring many characteristics of the organisms and # populations along evolution. # ############################################################################### The complete documentation being quite heavy, it is not included in basic distributions. Please visit www.aevol.fr To take a quick tour, please take the following steps: 1) Compile Aevol with the following commands: cd aevol/build cmake .. make In that process, you'll need development packages. Here are the basic dependencies on a Debian system: build-essential cmake zlib1g-dev libboost-dev libx11-dev libboost-filesystem1.67-dev One option to install them all at once is to run the following command: sudo apt install build-essential cmake zlib1g-dev libboost-dev libx11-dev libboost-filesystem1.67-dev 2) To run an example, e.g. basic, assuming you're in Aevol's root directory: cd examples/basic ../../build/bin/aevol_create ../../build/bin/aevol_run The first command will create an experiment with the parameters contained in the "param.in" file The second command will launch the simulation for 1000 generations (otherwise, use the --nb_timesteps option to specify the desired number of generations) For more information, please see the manpages in the `doc` directory (e.g. man -l aevol_create.1), or run any executable with the --help option (e.g. aevol_create --help), and ultimately visit www.aevol.fr
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