Explore projects

An R package for specifying and extracting data frames ready for data analysis from populations of MR images.

Flexible and extensible framework that integrates state-of-the-art methods for graph partitioning and sparse matrix ordering.

C++ software for generating configurations of a molecular system (coordinates and velocities) distributed according to the QSD (Quasi Stationary Distribution) within a user defined metastable state.

Scripts to prepare and clean corpora.

CHEPIN simulation's code

Visualize, track and cluster genes based on their expression, intron retention and splicing profile during the Zebrafish development!

MarmoteCore is a C++ environment for modeling with Markov chains. It consists in a reduced set of high-level abstractions for constructing state spaces, transition structures and Markov chains (discrete-time and continuous-time).

Supplementary datasets and codes for the manuscript "Implication of lipid turnover for the control of energy balance", S. Bernard and K.L. Spalding

This project contains:

a mathematical implementation of the carbohydrate-insulin model (CIM) and an energy-in, energy-out version of the energy-balance model (EBM-IOM) with a component for lipid turnover dynamics.

virtual clinical cohort datasets

numerical simulation results

script files to reproduce numerical simulations

a script file to generate manuscript figures

C++ header-only Timer library.

Development of methods and algorithms to mine "interesting" numerical rules from datasets containing numerical and symbolic attributes.

Estimation of IO peak as a function of average IO load + min size burst buffers