Commits · 62d76ae306b87b295a9099318a5a449fff93e74a · DEBREUVE Eric / NutriMorph

Jun 12, 2020
- Format update: NutriMorph can be run on a file or on multiple files within repositories · 62d76ae3
  NADAL Morgane authored 4 years ago
  
  62d76ae3
- update: prm differenciation mode in frangi --> indirect · 5256359b
  NADAL Morgane authored 4 years ago
  
  5256359b
- small correction · 40ccd520
  NADAL Morgane authored 4 years ago
  
  40ccd520
Jun 11, 2020
- Annotated the whole Nutrimorph script, except specific fcts in Frangi, Dijkstra and SKLGraph. · d4054214
  NADAL Morgane authored 4 years ago
  
  d4054214
Jun 08, 2020
- some modifs · 4cadf915
  NADAL Morgane authored 4 years ago
  
  4cadf915
- delete too big somas · 5a3fbfdc
  NADAL Morgane authored 4 years ago
  
  + under dev: delete too big extensions
  5a3fbfdc
Jun 05, 2020
- solved hysteresis bug - still in dvpt · c7b23f47
  NADAL Morgane authored 4 years ago
  
  c7b23f47
- working on hysteresis bug · 4a5d39df
  NADAL Morgane authored 4 years ago
  
  4a5d39df
May 18, 2020
- possibility to choose the boundaries for the histograms · 24399934
  NADAL Morgane authored 4 years ago
  
  24399934
May 14, 2020
- bugs correction · 8105237d
  NADAL Morgane authored 4 years ago
  
  8105237d
- errors correction - graph features extraction completed · 1c3e0601
  NADAL Morgane authored 4 years ago
  
  1c3e0601
May 07, 2020
- dealt with hysteresis pb + added features: · 6e2a11eb
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  6e2a11eb
- dealt with hysteresis pb + added features: · a09e72c6
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  a09e72c6
May 05, 2020
- added hist lengths and thickness features · 1a094725
  NADAL Morgane authored 4 years ago
  
  1a094725
Apr 29, 2020
- improved extensions lengths hist · 4d255a79
  NADAL Morgane authored 4 years ago
  
  4d255a79
Apr 27, 2020

added soma features (volume + working on best fitting ellipsoid axes) +... · 09937e58

NADAL Morgane authored 4 years ago

added soma features (volume + working on best fitting ellipsoid axes) + modified skl brick.edge algo to support None value for calculus of edge lengths

09937e58

Apr 24, 2020
- tests frangi time and memory usage + frangi prms · 658a41a1
  NADAL Morgane authored 4 years ago
  
  658a41a1
Apr 23, 2020
- tests frangi time usage · d5cb64d0
  NADAL Morgane authored 4 years ago
  
  d5cb64d0
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 4 years ago
  
  81f6e4a0
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 4 years ago
  
  96d784c3
- Revert "added Frangi prms + README to parameters.ini" · 5649134d
  NADAL Morgane authored 5 years ago
  
  This reverts commit efbce256
  5649134d
- added Frangi prms + README to parameters.ini · efbce256
  NADAL Morgane authored 5 years ago
  
  efbce256
Mar 23, 2020
- parameters.py -> search_parameters.py: search parameters from.INI file · 22f5113c
  NADAL Morgane authored 5 years ago
  
  22f5113c
Mar 21, 2020
- Used configparser to link parameters.ini to nutrimorph.py · 76d5eb83
  NADAL Morgane authored 5 years ago
  
  76d5eb83
Mar 20, 2020
- corrected error in ToPixel · 87d5683e
  NADAL Morgane authored 5 years ago
  
  87d5683e
Mar 18, 2020
- Created PySide2 Image Verification algo (still some bugs!!) · 56ee3805
  NADAL Morgane authored 5 years ago
  
  56ee3805
Mar 17, 2020
- dealt with parameters issues (pixel-micron + arguments in fct) + some refactoring · d84ad67e
  NADAL Morgane authored 5 years ago
  
  d84ad67e
Mar 16, 2020
- created parameters.ini file (todo: clean up) + still working on PySide2 for ImageVerification() · 110f487c
  NADAL Morgane authored 5 years ago
  
  110f487c
Mar 13, 2020
- refactoring · 56c71b36
  NADAL Morgane authored 5 years ago
  
  56c71b36
- modif FindVoxelDimensionInMicrons() w/ re expression + try-except · 3b79f558
  NADAL Morgane authored 5 years ago
  
  3b79f558
Mar 11, 2020
- modified selem (in micron) in prms + in other fcts · c753b56b
  NADAL Morgane authored 5 years ago
  
  c753b56b
Mar 09, 2020
- Added the dijkstra and frangi algo (not the link). · 7745e79b
  NADAL Morgane authored 5 years ago
  
  Added an algorithm for the verification for image dimension and coherence with the parameter channel. No user interface yet because of a bug in PySide2.
  7745e79b
- added Morgane as contributor · d1519363
  DEBREUVE Eric authored 5 years ago
  
  d1519363
Mar 08, 2020
- refactoring · 445f2be8
  DEBREUVE Eric authored 5 years ago
  
  445f2be8
Mar 06, 2020
- recfactoring · 2e524b41
  DEBREUVE Eric authored 5 years ago
  
  2e524b41
Dec 13, 2019
- reorg + preliminary c-based frangi · 3b8c5fc0
  DEBREUVE Eric authored 5 years ago
  
  3b8c5fc0
Oct 15, 2019
- added in_parallel prm · 7bbfba10
  DEBREUVE Eric authored 5 years ago
  
  7bbfba10
- added licence · 83da42da
  DEBREUVE Eric authored 5 years ago
  
  83da42da
Sep 19, 2019
- reorg+somas to img w or wo ext · 1ab35221
  DEBREUVE Eric authored 5 years ago
  
  1ab35221