• Mathieu Giraud's avatar
    core/segment.cpp: the FineSegmenter segments the MAX_12 pseudo-germline · 17e9c095
    Mathieu Giraud authored
    For the MAX_12 pseudo-germline, the FineSegmenter now calls override_rep5_rep3_from_labels,
    and then continue by the regular way.
    Note that IKmerStore:getLabel() returns *one* Fasta file, even when several files were used
    for the same KmerAffect, such as in TRD+ or IGK+. In these cases, the FineSegmenter will
    probably fail when the bad Fasta file is returned.
segment.cpp 30.7 KB