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Commit ef44c2bc authored by Quentin Khan's avatar Quentin Khan
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Merge branch 'master' into adaptive

parents 78655da8 27f9a090
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Addons/CKernelApi/Src/FScalFMMEngine.hpp
View file @ ef44c2bc
......@@ -178,37 +178,6 @@ public:
}
/** Test ... */
struct RunContainer{
template< int nbAttributeToInsert,class ContainerClass,class LeafClass, class CellClass>
static void Run(FOctree<FReal,CellClass,ContainerClass,LeafClass> * octree,
int NbPartToInsert,int * strideForEachAtt,
FReal* rawDatas){
generic_tree_abstract_insert<ContainerClass,LeafClass,CellClass,nbAttributeToInsert>(octree,
NbPartToInsert,strideForEachAtt,rawDatas);
}
};
template<class ContainerClass,class LeafClass, class CellClass, int nbAttributeToInsert>
void generic_tree_abstract_insert(FOctree<FReal,CellClass,ContainerClass,LeafClass> * octree,
int NbPartToInsert,int * strideForEachAtt,
FReal* rawDatas){
for(FSize idxPart = 0; idxPart<NbPartToInsert ; ++idxPart){
FPoint<FReal> pos = FPoint<FReal>(rawDatas[0],rawDatas[1],rawDatas[2]);
MortonIndex index = octree->getMortonFromPosition(pos);
//Insert with how many attributes ???
octree->insert(pos,idxPart);
//Get again the container
ContainerClass * containerToFill = octree->getLeafSrc(index);//cannot be nullptr
std::array<FReal,nbAttributeToInsert> arrayOfAttribute;
for(int idxAtt = 0; idxAtt<nbAttributeToInsert ; ++idxAtt){
arrayOfAttribute[idxAtt] = rawDatas[3+ strideForEachAtt[idxAtt]];
}
int idxToRemove = containerToFill->getNbParticles();
containerToFill->remove(&idxToRemove,1);
containerToFill->push(pos,idxPart,arrayOfAttribute);
}
}
template<class ContainerClass,class LeafClass,class CellClass>
void generic_get_forces_xyz(FOctree<FReal,CellClass,ContainerClass,LeafClass> * octree,
......@@ -820,15 +789,17 @@ public:
* get the time spent in each operator.
*/
virtual void get_timers(FReal * Timers){
const FTic * timers = algoTimer->getAllTimers();
int nbTimers = algoTimer->getNbOfTimerRecorded();
for(int idTimer = 0; idTimer<nbTimers ; ++idTimer){
Timers[idTimer] = timers[idTimer].elapsed();
}
Timers[0] = algoTimer->Timers["P2M"].elapsed();
Timers[1] = algoTimer->Timers["M2M"].elapsed();
Timers[2] = algoTimer->Timers["M2L"].elapsed();
Timers[3] = algoTimer->Timers["L2L"].elapsed();
Timers[4] = algoTimer->Timers["L2P"].elapsed();
Timers[5] = algoTimer->Timers["P2P"].elapsed();
Timers[6] = algoTimer->Timers["NearField"].elapsed();
}
virtual int get_nb_timers(){
return algoTimer->getNbOfTimerRecorded();
return FAlgorithmTimers::nbTimers;
}
virtual void set_upper_limit(int upperLimit){
......
CMakeLists.txt
View file @ ef44c2bc
......@@ -34,7 +34,7 @@ GetCpuInfos()
# SCALFMM version number. An even minor number corresponds to releases.
set(SCALFMM_MAJOR_VERSION 1)
set(SCALFMM_MINOR_VERSION 4)
set(SCALFMM_MINOR_VERSION 5)
set(SCALFMM_PATCH_VERSION 0)
set(SCALFMM_VERSION "${SCALFMM_MAJOR_VERSION}.${SCALFMM_MINOR_VERSION}.${SCALFMM_PATCH_VERSION}" )
......@@ -375,35 +375,53 @@ if (MORSE_DISTRIB_DIR OR EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules/morse/
list(APPEND CMAKE_INSTALL_RPATH "${LAPACK_LIBRARY_DIRS}")
endif()
message (STATUS "check BLAS Fortran mangling")
# check blas and lapack symbols naming
set(CMAKE_REQUIRED_LIBRARIES "${BLAS_LIBRARIES}")
check_function_exists(dgemv_ DGEMV_ADD_)
set (SCALFMM_BLAS_UPCASE OFF)
set (SCALFMM_BLAS_NOCHANGE OFF)
message (STATUS "BLAS dgemv_ " ${DGEMV_ADD_} ${SCALFMM_BLAS_UPCASE})
if (DGEMV_ADD_)
set (SCALFMM_BLAS_ADD_ ON)
message (STATUS "BLAS dgemv_ symbol found, SCALFMM_BLAS_ADD_ is ON")
else (DGEMV_ADD_)
set (SCALFMM_BLAS_ADD_ OFF)
# add options to let the user be able to force a behavior
option( SCALFMM_BLAS_ADD_ "Set to ON to force calls to BLAS Fortran symbols with _ (ex: dgemm_)" OFF )
option( SCALFMM_BLAS_UPCASE "Set to ON to force calls to BLAS Fortran symbols in capital (ex: DGEMM)" OFF )
option( SCALFMM_BLAS_NOCHANGE "Set to ON to force calls to BLAS Fortran symbols with no change (ex: dgemm)" OFF )
# if options not changed by user then auto-detection
if (NOT SCALFMM_BLAS_ADD_ AND NOT SCALFMM_BLAS_UPCASE AND NOT SCALFMM_BLAS_NOCHANGE)
# give blas libraries and check dgemm symbol
set(CMAKE_REQUIRED_LIBRARIES "${BLAS_LIBRARIES}")
check_function_exists(dgemv_ DGEMV_ADD_)
check_function_exists(DGEMV DGEMV_UPCASE)
if (DGEMV_UPCASE)
set (SCALFMM_BLAS_UPCASE ON)
message (STATUS "BLAS DGEMV symbol found, SCALFMM_BLAS_UPCASE is ON")
else (DGEMV_UPCASE)
# set (SCALFMM_BLAS_UPCASE OFF)
check_function_exists(dgemv DGEMV_NOCHANGE)
if (DGEMV_NOCHANGE)
set (SCALFMM_BLAS_NOCHANGE ON)
message (STATUS "BLAS dgemv symbol found, SCALFMM_BLAS_NOCHANGE is ON")
# else (DGEMV_NOCHANGE)
# set (SCALFMM_BLAS_NOCHANGE OFF)
endif (DGEMV_NOCHANGE)
endif (DGEMV_UPCASE)
endif (DGEMV_ADD_)
if ( (NOT DGEMV_ADD_) AND (NOT DGEMV_UPCASE) AND (NOT DGEMV_NOCHANGE) )
message(FATAL_ERROR "BLAS Fortran mangling cannot be properly detected")
endif ()
check_function_exists(dgemv DGEMV_NOCHANGE)
# here we consider that the first kind of symbol found will be the one used
# current order is: ADD_, UPCASE, NOCHANGE
if (DGEMV_ADD_)
set (SCALFMM_BLAS_ADD_ ON)
set (SCALFMM_BLAS_UPCASE OFF)
set (SCALFMM_BLAS_NOCHANGE OFF)
message (STATUS "BLAS dgemv_ symbol found, SCALFMM_BLAS_ADD_ is ON")
else (DGEMV_ADD_)
if (DGEMV_UPCASE)
set (SCALFMM_BLAS_ADD_ OFF)
set (SCALFMM_BLAS_UPCASE ON)
set (SCALFMM_BLAS_NOCHANGE OFF)
message (STATUS "BLAS DGEMV symbol found, SCALFMM_BLAS_UPCASE is ON")
else (DGEMV_UPCASE)
if (DGEMV_NOCHANGE)
set (SCALFMM_BLAS_ADD_ OFF)
set (SCALFMM_BLAS_UPCASE OFF)
set (SCALFMM_BLAS_NOCHANGE ON)
message (STATUS "BLAS dgemv symbol found, SCALFMM_BLAS_NOCHANGE is ON")
endif (DGEMV_NOCHANGE)
endif (DGEMV_UPCASE)
endif (DGEMV_ADD_)
if ( (NOT DGEMV_ADD_) AND (NOT DGEMV_UPCASE) AND (NOT DGEMV_NOCHANGE) )
message(FATAL_ERROR "BLAS Fortran mangling is not properly detected - please check your BLAS libraries")
endif ()
else (NOT SCALFMM_BLAS_ADD_ AND NOT SCALFMM_BLAS_UPCASE AND NOT SCALFMM_BLAS_NOCHANGE)
if (SCALFMM_BLAS_ADD_)
message (STATUS "SCALFMM_BLAS_ADD_ is set to ON")
endif()
if (SCALFMM_BLAS_UPCASE)
message (STATUS "SCALFMM_BLAS_UPCASE is set to ON")
endif()
if (SCALFMM_BLAS_NOCHANGE)
message (STATUS "SCALFMM_BLAS_NOCHANGE is set to ON")
endif()
endif (NOT SCALFMM_BLAS_ADD_ AND NOT SCALFMM_BLAS_UPCASE AND NOT SCALFMM_BLAS_NOCHANGE)
else()
message(WARNING "BLAS has not been found, SCALFMM will continue to compile but some applications will be disabled.")
message(WARNING "If you have BLAS set BLAS_LIBDIR, BLAS_INCDIR or BLAS_DIR (CMake variables using -D or environment variables).")
......@@ -466,8 +484,12 @@ if (MORSE_DISTRIB_DIR OR EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules/morse/
endif(SCALFMM_USE_FFT)
list(APPEND FUSE_LIST "FFT")
message(STATUS "SCALFMM_USE_FFT = ${SCALFMM_USE_FFT}")
list(REMOVE_DUPLICATES SCALFMM_INCLUDES)
list(REMOVE_DUPLICATES SCALFMM_LIBRARIES)
if (SCALFMM_INCLUDES)
list(REMOVE_DUPLICATES SCALFMM_INCLUDES)
endif()
if (SCALFMM_LIBRARIES)
list(REMOVE_DUPLICATES SCALFMM_LIBRARIES)
endif()
#
# C++ 2011
......
Src/GroupTree/Chebyshev/FChebCellPOD.hpp
View file @ ef44c2bc
......@@ -51,6 +51,16 @@ public:
symb->mortonIndex = inMortonIndex;
}
/** To get the cell level */
int getLevel() const {
return symb->level;
}
/** To set the cell level */
void setLevel(const int level) {
symb->level = level;
}
/** To get the position */
FTreeCoordinate getCoordinate() const {
return FTreeCoordinate(symb->coordinates[0],
......@@ -103,4 +113,3 @@ public:
#endif // FCHEBCELLPOD_HPP
Src/GroupTree/Core/FBasicCellPOD.hpp
View file @ ef44c2bc
......@@ -9,7 +9,7 @@
struct alignas(FStarPUDefaultAlign::StructAlign) FBasicCellPOD {
MortonIndex mortonIndex;
int coordinates[3];
int level;
};
#endif // FBASICCELLPOD_HPP
Src/GroupTree/Core/FGroupTree.hpp
View file @ ef44c2bc
......@@ -99,6 +99,7 @@ public:
CompositeCellClass newNode = newBlock->getCompleteCell(cellIdInBlock);
newNode.setMortonIndex(newNodeIndex);
newNode.setCoordinate(newNodeCoordinate);
newNode.setLevel(idxLevel);
// Add leaf
nbParticlesOffsetBeforeLeaf = newParticleBlock->newLeaf(newNodeIndex, cellIdInBlock,
......@@ -149,6 +150,7 @@ public:
CompositeCellClass newNode = newBlock->getCompleteCell(cellIdInBlock);
newNode.setMortonIndex(newNodeIndex);
newNode.setCoordinate(newNodeCoordinate);
newNode.setLevel(idxLevel);
cellIdInBlock += 1;
blockIteratorInOctree.moveRight();
......
Src/GroupTree/Rotation/FRotationCellPOD.hpp
View file @ ef44c2bc
......@@ -53,6 +53,16 @@ public:
symb->mortonIndex = inMortonIndex;
}
/** To get the cell level */
int getLevel() const {
return symb->level;
}
/** To set the cell level */
void setLevel(const int level) {
symb->level = level;
}
/** To get the position */
FTreeCoordinate getCoordinate() const {
return FTreeCoordinate(symb->coordinates[0],
......@@ -109,4 +119,3 @@ public:
#endif // FROTATIONCELLPOD_HPP
Src/GroupTree/Taylor/FTaylorCellPOD.hpp
View file @ ef44c2bc
......@@ -51,6 +51,16 @@ public:
symb->mortonIndex = inMortonIndex;
}
/** To get the cell level */
int getLevel() const {
return symb->level;
}
/** To set the cell level */
void setLevel(const int level) {
symb->level = level;
}
/** To get the position */
FTreeCoordinate getCoordinate() const {
return FTreeCoordinate(symb->coordinates[0],
......@@ -102,4 +112,3 @@ public:
};
#endif // FTAYLORCELLPOD_HPP
Src/GroupTree/TestKernel/FTestCellPOD.hpp
View file @ ef44c2bc
......@@ -34,6 +34,16 @@ public:
symb->mortonIndex = inMortonIndex;
}
/** To get the cell level */
int getLevel() const {
return symb->level;
}
/** To set the cell level */
void setLevel(const int level) {
symb->level = level;
}
/** To get the position */
FTreeCoordinate getCoordinate() const {
return FTreeCoordinate(symb->coordinates[0],
......@@ -81,4 +91,3 @@ public:
#endif // FTESTCELLPOD_HPP
Src/GroupTree/Uniform/FUnifCellPOD.hpp
View file @ ef44c2bc
......@@ -51,6 +51,16 @@ public:
symb->mortonIndex = inMortonIndex;
}
/** To get the cell level */
int getLevel() const {
return symb->level;
}
/** To set the cell level */
void setLevel(const int level) {
symb->level = level;
}
/** To get the position */
FTreeCoordinate getCoordinate() const {
return FTreeCoordinate(symb->coordinates[0],
......@@ -129,4 +139,3 @@ public:
};
#endif // FUNIFCELLPOD_HPP
Src/Kernels/Interpolation/FInterpMatrixKernel_TensorialInteractions.hpp
View file @ ef44c2bc
......@@ -45,16 +45,42 @@
* The table applyTab provides the indices in the reduced storage table
* corresponding to the application scheme depicted earlier.
*
* PB: BEWARE! Homogeneous matrix kernels do not support cell width extension
* \warning BEWARE! Homogeneous matrix kernels do not support cell width extension
* yet. Is it possible to find a reference width and a scale factor such that
* only 1 set of M2L opt can be used for all levels??
*
* The definition of the potential p and force f are extended to the case
* of tensorial interaction kernels:
*
*\f$ p_i(x) = K_{ip}(x,y)w_p(y),\f$ \f$ \forall i=1..NPOT, p=1..NPV\f$
*
* \f$f_{ik}= w_p(x)K_{ip,k}(x,y)w_p(y)\f$
*
* Since the interpolation scheme is such that
*
*\f$ p_i(x) \approx S^m(x) L^{m}_{ip}\f$
*
* \f$f_{ik}= w_p(x) \nabla_k S^m(x) L^{m}_{ip}\f$
*
* with
*
* \f$ L^{m}_{ip} = K^{mn}_{ip} S^n(y) w_p(y)\f$ (local expansion)
*
*\f$ M^{m}_{p} = S^n(y) w_p(y)\f$ (multipole expansion)
*
* then the multipole exp have NPV components and the local exp NPOT*NPV.
*
* NB1: Only the computation of forces requires that the sum over p is
* performed at L2P step. It could be done at M2L step for the potential.
*
* NB2: An efficient application of the matrix kernel is highly kernel
* dependent, we recommand overriding the P2M/M2L/L2P function of the kernel
* you are using in order to have opsimal performances + set your own NRHS/NLHS.*
*/
////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////
//
///
// Tensorial Matrix Kernels (NCMP>1)
//
// The definition of the potential p and force f are extended to the case
......
Src/Utils/FAlgorithmTimers.hpp
View file @ ef44c2bc
......@@ -56,8 +56,13 @@ public:
/// Elapsed time between last FTic::tic() and FTic::tac() for given timer.
double getTime(std::string TimerName) const{
//assert to verify size
return Timers.at(TimerName).elapsed();
double res = 0;
try {
res = Timers.at(TimerName).elapsed();
} catch(std::out_of_range) {
res = 0;
}
return res;
}
/// Cumulated time between all FTic::tic() and FTic::tac() for given timer.
......
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