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ScalFMM
Commit 5b6d230c authored by Martin Khannouz's avatar Martin Khannouz Committed by Berenger Bramas
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Change a little bit the way task are added. 

Also change the script to compile everything and run test on my
computer.
parent b1fed762
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Showing with 254 additions and 37 deletions
Tests/GroupTree/compareDAGmapping.cpp
View file @ 5b6d230c
......@@ -7,6 +7,7 @@
#include <thread>
#include <deque>
#include <unordered_set>
#include <unordered_map>
using namespace std;
#include "../../Src/Utils/FGlobal.hpp"
......@@ -22,10 +23,18 @@ struct Task
vector<long long int> id;
int mpiNode;
int level;
double perf;
bool operator==(const Task & other) const
{
if(type != other.type || id.size() != other.id.size())
return false;
if(type == P2P_OUT) //Symétrisation
if(id[0] == other.id[2] && id[1] == other.id[3] && id[2] == other.id[0] && id[3] == other.id[1])
return true;
if(type == M2L_OUT) //Symétrisation
if(id[1] == other.id[3] && id[2] == other.id[4] && id[3] == other.id[1] && id[4] == other.id[2])
return true;
for(size_t i = 0; i < id.size(); ++i)
if(id[i] != other.id[i])
return false;
......@@ -56,6 +65,7 @@ namespace std {
struct DagData
{
unordered_set<Task> allTask;
unordered_map<long long int, double> performence;
};
bool parseLine(DagData & dagData, deque<string> & lineElements)
......@@ -67,6 +77,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = P2P_OUT;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(4);
task.id[0] = stoll(lineElements[9]);
task.id[1] = stoll(lineElements[10]);
......@@ -79,6 +90,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = P2P;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(4);
task.id[0] = stoll(lineElements[5]);
task.id[1] = stoll(lineElements[6]);
......@@ -93,6 +105,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = M2L;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(5);
task.id[0] = stoll(lineElements[2]);
task.id[1] = stoll(lineElements[5]);
......@@ -106,6 +119,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = M2L_OUT;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(5);
task.id[0] = stoll(lineElements[2]);
task.id[1] = stoll(lineElements[8]);
......@@ -119,6 +133,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = M2M;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(5);
task.id[0] = stoll(lineElements[2]);
task.id[1] = stoll(lineElements[8]);
......@@ -132,6 +147,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = L2L;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(5);
task.id[0] = stoll(lineElements[2]);
task.id[1] = stoll(lineElements[8]);
......@@ -145,6 +161,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = L2P;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(2);
task.id[0] = stoll(lineElements[5]);
task.id[1] = stoll(lineElements[6]);
......@@ -155,6 +172,7 @@ bool parseLine(DagData & dagData, deque<string> & lineElements)
{
task.type = L2P;
task.uniqueId = stoll(lineElements[1]);
task.perf = dagData.performence.count(task.uniqueId) == 1 ? dagData.performence[task.uniqueId] : 0.0;
task.id.resize(2);
task.id[0] = stoll(lineElements[5]);
task.id[1] = stoll(lineElements[6]);
......@@ -192,20 +210,64 @@ bool fillDagData(const char* const filename, DagData & dagData)
string line;
string delim(", ");
deque<string> splitLine;
int count = 0;
while(!fichier.eof())
{
++count;
getline(fichier, line);
splitLine.clear();
split(line, delim, splitLine);
parseLine(dagData, splitLine);
}
cout << (count-1) << " lines in " << filename << endl;
// instructions
fichier.close(); // on ferme le fichier
return true;
}
bool getTaskPerf(string line, double &perf)
{
perf = stod(line);
return true;
}
bool getTaskId(string line, long long int & taskId)
{
size_t pos = line.rfind('_');
if(pos == string::npos)
return false;
taskId = stoll(line.substr(pos));
return true;
}
void fillPerformanceData(const char* const filename, DagData & dagData)
{
std::ifstream fichier(filename, ios::in); // on ouvre le fichier en lecture
if(!fichier) // si l'ouverture a réussi
cerr << "Couldn't open " << filename << endl;
string line;
string delim(", ");
deque<string> splitLine;
bool getPerf = false;
long long int taskId;
double perf;
while(!fichier.eof())
{
getline(fichier, line);
if(line.size() > 0 && line[0] == 'N')
{
if(getTaskId(line.substr(3), taskId))
getPerf = true;
}
else if(getPerf && line.size() > 0 && line[0] == 'S')
{
if(getTaskPerf(line.substr(3), perf))
{
getPerf = false;;
dagData.performence[taskId] = perf;
}
}
splitLine.clear();
split(line, delim, splitLine);
parseLine(dagData, splitLine);
}
fichier.close(); // on ferme le fichier
}
void compareDag(DagData& dag1, DagData& dag2, int treeHeight)
{
long long int notFoundCount[treeHeight] = {0};
......@@ -238,33 +300,46 @@ void compareDag(DagData& dag1, DagData& dag2, int treeHeight)
if(notFound[i] == true)
cout << "Diff lvl " << i << " -> " << notFoundCount[i] << endl;
}
int main(int argc, char* argv[]){
int main(int argc, char* argv[])
{
const FParameterNames ExplicitTrace {
{"-E"},
"Simgrid trace from explicit mpi"
};
const FParameterNames ImplicitTrace {
{"-I"} ,
"Simgrid trace from implicit mpi"
};
const FParameterNames Explicit {
{"-e"},
"Trace from explicit mpi"
"Simgrid trace from explicit mpi"
};
const FParameterNames Implicit {
{"-i"} ,
"Trace from implicit mpi"
"Simgrid trace from implicit mpi"
};
const FParameterNames TreeHeight {
{"-h"},
"Height of the tree"
};
FHelpDescribeAndExit(argc, argv, "Compare DAG mapping", Explicit, Implicit, TreeHeight);
FHelpDescribeAndExit(argc, argv, "Compare DAG mapping", Explicit, Implicit, ExplicitTrace, ImplicitTrace, TreeHeight);
// Get params
const char* const explicitFilename = FParameters::getStr(argc,argv,Explicit.options, "explicit.rec");
const char* const implicitFilename = FParameters::getStr(argc,argv,Implicit.options, "implicit.rec");
const char* const explicitFilename = FParameters::getStr(argc,argv,Explicit.options, "scalfmm_explicit.out");
const char* const implicitFilename = FParameters::getStr(argc,argv,Implicit.options, "scalfmm_implicit.out");
const char* const explicitTraceFilename = FParameters::getStr(argc,argv,Explicit.options, "explicit.rec");
const char* const implicitTraceFilename = FParameters::getStr(argc,argv,Implicit.options, "implicit.rec");
const int treeHeight = FParameters::getValue(argc,argv,TreeHeight.options, 5);
DagData implicitData, explicitData;
bool implicitGood, explicitGood;
std::thread explicitThread([&](){
fillPerformanceData(explicitTraceFilename, explicitData);
explicitGood = fillDagData(explicitFilename, explicitData);
});
explicitThread.join();
std::thread implicitThread([&](){
fillPerformanceData(implicitTraceFilename, implicitData);
implicitGood = fillDagData(implicitFilename, implicitData);
});
implicitThread.join();
......
compile_dag_result.sh
View file @ 5b6d230c
#!/bin/sh
export SCALFMM_SIMGRIDOUT='scalfmm.out'
make testBlockedImplicitAlgorithm generateMapping testBlockedMpiAlgorithm compareDAGmapping -j16
export GROUP_SIZE=8
export TREE_HEIGHT=3
export NB_NODE=8
export NB_PARTICLE_PER_NODE=$((`awk "BEGIN{print 8 ** ($TREE_HEIGHT-1)}"` / $NB_NODE))
make testBlockedImplicitAlgorithm generateMapping testBlockedMpiAlgorithm compareDAGmapping -j $((`nproc`*2))
if [ $? -ne 0 ]; then
exit
fi
mpiexec -n 8 ./Tests/Release/testBlockedMpiAlgorithm -nb 8 -bs 8 -h 3
mpiexec -n $NB_NODE ./Tests/Release/testBlockedMpiAlgorithm -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT
if [ $? -ne 0 ]; then
exit
fi
......@@ -18,10 +22,10 @@ for i in $a; do
done
cp -f $SCALFMM_SIMGRIDOUT scalfmm_explicit.out
mpiexec -n 8 ./Tests/Release/generateMapping -nb 8 -bs 8 -h 3
mpiexec -n 8 ./Tests/Release/testBlockedImplicitAlgorithm -map mapping -f canard.fma -bs 8 -h 3
mpiexec -n $NB_NODE ./Tests/Release/generateMapping -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT
mpiexec -n $NB_NODE ./Tests/Release/testBlockedImplicitAlgorithm -map mapping -f canard.fma -bs $GROUP_SIZE -h $TREE_HEIGHT
if [ $? -ne 0 ]; then
exit
fi
cp -f scalfmm.out_0 scalfmm_implicit.out
./Tests/Release/compareDAGmapping -e scalfmm_explicit.out -i scalfmm_implicit.out -h 3 > output
./Tests/Release/compareDAGmapping -e scalfmm_explicit.out -i scalfmm_implicit.out -h $TREE_HEIGHT > output
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