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Commit da6314bc authored by David Parsons's avatar David Parsons
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Remove details from help page

These details could have their place in man and/or user_manual
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......@@ -264,41 +264,6 @@ void print_help(char* prog_path) {
printf("\tonly treat genetic unit #NUM_GU (by default: treat all genetic units)\n");
printf(" -a\n");
printf("\ttreat all the individuals (by default: treat only the best)\n");
printf("\n\
This program extracts some data about the individuals and write\n\
them into text files easy to parse with e.g. matlab.\n\
\n\
Two kinds of data can be extracted :\n\
\n\
* data about the phenotype (option -T) : write information about\n\
the proteins in a text file. A space delimits two proteins, a\n\
new line delimits two individuals. For each protein, the output\n\
is \"m_h_w_c_r_s_f_l_z_g\" where :\n\
* m, h, w and c are the mean, height, width and concentration of the protein\n\
* r is an identifier of the rna it belongs (useful to\n\
know if several proteins are on the same rna)\n\
* s indicates the strand (LEADING/LAGGING)\n\
* f and l are the first and last translated base\n\
* z indicates the feature (at the center of the protein)\n\
* g indicates the genetic unit to which the protein belongs (0=chromosome, 1=plasmid)\n\
\n\
* sequences of the individuals (option -S) : write the sequences\n\
in a text file. A new line delimits two individuals. In case\n\
there are several GUs, they are separated with whitespaces.\n\
\n\
Examples :\n\
\n\
For timestep 20000, write infos about the phenotypes of all the\n\
individuals in phe_020000 and the sequences of all the\n\
individuals in seq_020000 :\n\
\n\
extract -a -t 20000 -T phe_020000 -S seq_020000\n\
\n\
For timestep 20000, write the best individual's sequence in\n\
seq_020000_best :\n\
\n\
extract -t 20000 -S seq_020000_best\n");
}
......
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