Mentions légales du service

Skip to content
Snippets Groups Projects
Commit c954b2ac authored by Jérôme DAVID's avatar Jérôme DAVID
Browse files

Update dependencies (alignment API) and modify the documentation

parent 48daf77b
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
README.md
+ 46
− 29
View file @ c954b2ac
......@@ -19,7 +19,17 @@ Manuel Atencia, Jérôme David, Jérôme Euzenat, Data interlinking through robu
- You need to have [Maven](https://maven.apache.org/) installed
- Download and unzip [Alignment API](https://gitlab.inria.fr/moex/alignapi)
- Download and unzip [Alignment API](https://gitlab.inria.fr/moex/alignapi).
Use these commands to manually install alignment API :
```
wget ftp://ftp.inrialpes.fr/pub/exmo/software/ontoalign/align-4.10.zip
unzip align-4.10.zip -d alignapi
mvn install:install-file -Dfile=alignapi/lib/procalign.jar -DgroupId=fr.inrialpes.exmo.align -DartifactId=procalign -Dversion=4.10 -Dpackaging=jar
mvn install:install-file -Dfile=alignapi/lib/ontowrap.jar -DgroupId=fr.inrialpes.exmo -DartifactId=ontowrap -Dversion=4.10 -Dpackaging=jar
mvn install:install-file -Dfile=alignapi/lib/align.jar -DgroupId=org.semanticweb.owl.align -DartifactId=align -Dversion=4.10 -Dpackaging=jar
```
- Clone this repository :
```
......@@ -31,16 +41,7 @@ git clone git@gitlab.inria.fr:moex/linkex.git
cd linkex
```
Use these commands to manually install alignment API :
```
mvn install:install-file -Dfile=pathToAlignmentAPI/lib/procalign.jar -DgroupId=fr.inrialpes.exmo.align -DartifactId=procalign -Dversion=4.8 -Dpackaging=jar
mvn install:install-file -Dfile=pathToAlignmentAPI/lib/ontowrap.jar -DgroupId=fr.inrialpes.exmo.ontowrap -DartifactId=ontowrap -Dversion=4.8 -Dpackaging=jar
mvn install:install-file -Dfile=pathToAlignmentAPI/lib/align.jar -DgroupId=org.semanticweb.owl.align -DartifactId=align -Dversion=4.8 -Dpackaging=jar
```
- Compile and package into a jar
```
......@@ -54,26 +55,42 @@ Link key extraction tool can be run from command line.
From the linkex directory, you can get the followinf help message:
```
java -jar target/LinkkeyDiscovery-1.0-SNAPSHOT-jar-with-dependencies.jar -help
usage: java fr.inrialpes.exmo.linkkey.LinkkeyDiscoveryAlgorithm [options]
dataset1 dataset2
-c <c> considers composition of properties
-c1 <c1> Uri of the first class (if omitted, all instances are
considered)
-c2 <c2> Uri of the second class (if omitted, all instances are
considered)
-e <e> use reference links for PR evaluation
-f,--format <f> Format of the output: txt (default), edoal, html, bin
-help print this message
-i considers inverse of properties
-o,--output <o> output filename. Default files: standard output for txt
and edoal, 'result' for html and bin
-s <s> a support threshold between [0;1] for properties
(default:0)
-sparql if given the datasets are considered as sparql
endpoints
-t <t> types of extracted keys: eq or/and in (eq and in by
default)
-b <b> find links between blank nodes (true by
default)
-c <composition length> compose properties
-c1 <uri1> Uri of the first class (if omitted, all
instances are considered)
-c2 <uri2> Uri of the second class (if omitted, all
instances are considered)
-classes extracts link keys candidates with classes
-classesfull extracts link keys candidates with classes
full (may be very expensive)
-d <d> property discriminability threshold
-e <e> use the given reference links for precision
and recall evaluation.the links are given in
RDF (i.e. a list of triples with predicate
owl:sameAs)
-f,--format <format> Format of the output: txt (default), edoal,
html, bin, dot, txt2 (txt with links)
-help print this message
-i considers inverse of properties (only useful
with -c)
-l Lazy mode, data will be loaded when needed
(only available for bin)
-o,--output <outputfile> output filename. Default files: standard
output for txt and edoal, 'result' for html
and bin
-p1 <uriprefix1> prefix of classes that have to be considered
-p2 <uriprefix1> prefix of classes that have to be considered
-s <s> a support threshold between [0;1] for
properties (default:0)
-sparql if given the datasets are considered as sparql
endpoints
-t <eq or in> types of extracted keys: eq or/and in (eq and
in by default)
```
Example of command line:
......@@ -85,4 +102,4 @@ The extraction algorithm will extract intersection link key candidates (-t in).
It will consider only properties that are instanciated for at least 1% of instances of foaf:Person (-s 0.01).
It will consider inverse of properties and compostion of them until a maximum path length of 4.
The result will be rendered as a set of html files (-f html) located in directory "mycandidates" (-o mycandidates).
The option -mx5000m allows to give 10GB of memory to the virtual machine.
The option -mx5000m allows to give 5GB of memory to the virtual machine.
pom.xml
+ 4
− 19
View file @ c954b2ac
......@@ -6,21 +6,11 @@
<version>1.0-SNAPSHOT</version>
<packaging>jar</packaging>
<dependencies>
<!--dependency>
<groupId>org.apache.jena</groupId>
<artifactId>jena-core</artifactId>
<version>2.11.1</version>
</dependency-->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<!--dependency>
<groupId>org.apache.jena</groupId>
<artifactId>jena-arq</artifactId>
<version>2.11.1</version>
</dependency-->
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
......@@ -34,12 +24,12 @@
<dependency>
<groupId>fr.inrialpes.exmo.align</groupId>
<artifactId>procalign</artifactId>
<version>4.8</version>
<version>[4.8,)</version>
</dependency>
<dependency>
<groupId>org.semanticweb.owl.align</groupId>
<artifactId>align</artifactId>
<version>4.8</version>
<version>[4.8,)</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
......@@ -47,9 +37,9 @@
<version>3.9</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<groupId>fr.inrialpes.exmo.ontowrap</groupId>
<artifactId>ontowrap</artifactId>
<version>4.8</version>
<version>[4.8,)</version>
</dependency>
<dependency>
<groupId>junit</groupId>
......@@ -80,12 +70,7 @@
<version>8.4.1</version>
</dependency>
</dependencies>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<maven.compiler.source>1.8</maven.compiler.source>
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment