diff --git a/README.md b/README.md
index 897007e84ede107157ab68b012d054f49ef2a345..c6f042d6142b8a397eca2ef98f1c8458bb75d203 100644
--- a/README.md
+++ b/README.md
@@ -19,7 +19,17 @@ Manuel Atencia, Jérôme David, Jérôme Euzenat, Data interlinking through robu
- You need to have [Maven](https://maven.apache.org/) installed
-- Download and unzip [Alignment API](https://gitlab.inria.fr/moex/alignapi)
+- Download and unzip [Alignment API](https://gitlab.inria.fr/moex/alignapi).
+
+Use these commands to manually install alignment API :
+
+```
+wget ftp://ftp.inrialpes.fr/pub/exmo/software/ontoalign/align-4.10.zip
+unzip align-4.10.zip -d alignapi
+mvn install:install-file -Dfile=alignapi/lib/procalign.jar -DgroupId=fr.inrialpes.exmo.align -DartifactId=procalign -Dversion=4.10 -Dpackaging=jar
+mvn install:install-file -Dfile=alignapi/lib/ontowrap.jar -DgroupId=fr.inrialpes.exmo -DartifactId=ontowrap -Dversion=4.10 -Dpackaging=jar
+mvn install:install-file -Dfile=alignapi/lib/align.jar -DgroupId=org.semanticweb.owl.align -DartifactId=align -Dversion=4.10 -Dpackaging=jar
+```
- Clone this repository :
```
@@ -31,16 +41,7 @@ git clone git@gitlab.inria.fr:moex/linkex.git
cd linkex
```
-Use these commands to manually install alignment API :
-
-```
-mvn install:install-file -Dfile=pathToAlignmentAPI/lib/procalign.jar -DgroupId=fr.inrialpes.exmo.align -DartifactId=procalign -Dversion=4.8 -Dpackaging=jar
-
-mvn install:install-file -Dfile=pathToAlignmentAPI/lib/ontowrap.jar -DgroupId=fr.inrialpes.exmo.ontowrap -DartifactId=ontowrap -Dversion=4.8 -Dpackaging=jar
-
-mvn install:install-file -Dfile=pathToAlignmentAPI/lib/align.jar -DgroupId=org.semanticweb.owl.align -DartifactId=align -Dversion=4.8 -Dpackaging=jar
-```
- Compile and package into a jar
```
@@ -54,26 +55,42 @@ Link key extraction tool can be run from command line.
From the linkex directory, you can get the followinf help message:
```
java -jar target/LinkkeyDiscovery-1.0-SNAPSHOT-jar-with-dependencies.jar -help
-
usage: java fr.inrialpes.exmo.linkkey.LinkkeyDiscoveryAlgorithm [options]
dataset1 dataset2
- -c <c> considers composition of properties
- -c1 <c1> Uri of the first class (if omitted, all instances are
- considered)
- -c2 <c2> Uri of the second class (if omitted, all instances are
- considered)
- -e <e> use reference links for PR evaluation
- -f,--format <f> Format of the output: txt (default), edoal, html, bin
- -help print this message
- -i considers inverse of properties
- -o,--output <o> output filename. Default files: standard output for txt
- and edoal, 'result' for html and bin
- -s <s> a support threshold between [0;1] for properties
- (default:0)
- -sparql if given the datasets are considered as sparql
- endpoints
- -t <t> types of extracted keys: eq or/and in (eq and in by
- default)
+ -b <b> find links between blank nodes (true by
+ default)
+ -c <composition length> compose properties
+ -c1 <uri1> Uri of the first class (if omitted, all
+ instances are considered)
+ -c2 <uri2> Uri of the second class (if omitted, all
+ instances are considered)
+ -classes extracts link keys candidates with classes
+ -classesfull extracts link keys candidates with classes
+ full (may be very expensive)
+ -d <d> property discriminability threshold
+ -e <e> use the given reference links for precision
+ and recall evaluation.the links are given in
+ RDF (i.e. a list of triples with predicate
+ owl:sameAs)
+ -f,--format <format> Format of the output: txt (default), edoal,
+ html, bin, dot, txt2 (txt with links)
+ -help print this message
+ -i considers inverse of properties (only useful
+ with -c)
+ -l Lazy mode, data will be loaded when needed
+ (only available for bin)
+ -o,--output <outputfile> output filename. Default files: standard
+ output for txt and edoal, 'result' for html
+ and bin
+ -p1 <uriprefix1> prefix of classes that have to be considered
+ -p2 <uriprefix1> prefix of classes that have to be considered
+ -s <s> a support threshold between [0;1] for
+ properties (default:0)
+ -sparql if given the datasets are considered as sparql
+ endpoints
+ -t <eq or in> types of extracted keys: eq or/and in (eq and
+ in by default)
+
```
Example of command line:
@@ -85,4 +102,4 @@ The extraction algorithm will extract intersection link key candidates (-t in).
It will consider only properties that are instanciated for at least 1% of instances of foaf:Person (-s 0.01).
It will consider inverse of properties and compostion of them until a maximum path length of 4.
The result will be rendered as a set of html files (-f html) located in directory "mycandidates" (-o mycandidates).
-The option -mx5000m allows to give 10GB of memory to the virtual machine.
+The option -mx5000m allows to give 5GB of memory to the virtual machine.
diff --git a/pom.xml b/pom.xml
index e28bef2de5fdc8a721c3ce6e995ffe1553ea4a0f..88936c208872fcfa1bcc46a06377843fef5dfc73 100644
--- a/pom.xml
+++ b/pom.xml
@@ -6,21 +6,11 @@
<version>1.0-SNAPSHOT</version>
<packaging>jar</packaging>
<dependencies>
- <!--dependency>
- <groupId>org.apache.jena</groupId>
- <artifactId>jena-core</artifactId>
- <version>2.11.1</version>
- </dependency-->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
- <!--dependency>
- <groupId>org.apache.jena</groupId>
- <artifactId>jena-arq</artifactId>
- <version>2.11.1</version>
- </dependency-->
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
@@ -34,12 +24,12 @@
<dependency>
<groupId>fr.inrialpes.exmo.align</groupId>
<artifactId>procalign</artifactId>
- <version>4.8</version>
+ <version>[4.8,)</version>
</dependency>
<dependency>
<groupId>org.semanticweb.owl.align</groupId>
<artifactId>align</artifactId>
- <version>4.8</version>
+ <version>[4.8,)</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
@@ -47,9 +37,9 @@
<version>3.9</version>
</dependency>
<dependency>
- <groupId>${project.groupId}</groupId>
+ <groupId>fr.inrialpes.exmo.ontowrap</groupId>
<artifactId>ontowrap</artifactId>
- <version>4.8</version>
+ <version>[4.8,)</version>
</dependency>
<dependency>
<groupId>junit</groupId>
@@ -80,12 +70,7 @@
<version>8.4.1</version>
</dependency>
</dependencies>
-
-
-
-
-
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<maven.compiler.source>1.8</maven.compiler.source>