Commits · a649bc0d733d5072bb560c120d3532428863713f · moex / Alignment API

Mar 06, 2013
- - moved from log4j to slf4j · a649bc0d
  Jérôme Euzenat authored 12 years ago
  
  - suppressed any trace of log4j
  a649bc0d
Mar 10, 2012
- - suppressed dependence on BasicParameters · 75814f93
  Jérôme Euzenat authored 13 years ago
  
  75814f93
Jan 13, 2012
- - more systematically used finally · 955ef18f
  Jérôme Euzenat authored 13 years ago
  
  955ef18f
Dec 06, 2011
- - created the command-line package (cli) · 01a820b5
  Jérôme Euzenat authored 13 years ago
  
  01a820b5
Apr 11, 2010
- - improved/implemented -D argument · 4a41edc1
  Jérôme Euzenat authored 14 years ago
  
  4a41edc1
Mar 31, 2010
- - updated usage formatting · 52a6e932
  Jérôme Euzenat authored 15 years ago
  
  52a6e932
Mar 29, 2010
- - improved the usage() presentation · 80d8f6e7
  Jérôme Euzenat authored 15 years ago
  
  80d8f6e7
Mar 07, 2010
- - corrected warning due to cast warnings (Class<?>) · dc5bc269
  Jérôme Euzenat authored 15 years ago
  
  dc5bc269
Feb 18, 2010
- - lint:cast · 0fb3a601
  Jérôme Euzenat authored 15 years ago
  
  0fb3a601
Jan 03, 2010
- - Parameters replaced by Properties · aa77854c
  Jérôme Euzenat authored 15 years ago
  
  - Values are necessarily strings - Alignment and Cell extensions have been rewriten
  aa77854c
Sep 09, 2009
- - moved to Namespaces · 5e479c8a
  Jérôme Euzenat authored 15 years ago
  
  5e479c8a
Sep 13, 2008
- - OntologyCache is now local at each OntologyFactory (onto) · b822794b
  Jérôme Euzenat authored 16 years ago
  
  - Started to put copyright notices to INRIA instead of INRIA Rhone-Alpes (misc)
  b822794b
Mar 31, 2008
- - fully implemented abstract ontology management · 503f33d2
  Jérôme Euzenat authored 17 years ago
  
  503f33d2
Mar 23, 2008
- - added better modelling of ontologies · 3a548b38
  Jérôme Euzenat authored 17 years ago
  
  3a548b38
Feb 28, 2008
- - used the Package interface to print Version numbers from MANIFESTs · 81a1f415
  Jérôme Euzenat authored 17 years ago
  
  81a1f415
Feb 23, 2008
- - introduced Annotation class for defining namespaces and annotation tags · f7f2dc03
  Jérôme Euzenat authored 17 years ago
  
  f7f2dc03
Jan 26, 2008
- - modifed extension interface for better dealing with namespaces · e84a08a0
  Jérôme Euzenat authored 17 years ago
  
  e84a08a0
Apr 25, 2007
- - set more generic extension for TIME · 851eb17d
  Jérôme Euzenat authored 17 years ago
  
  851eb17d
Feb 27, 2007
- - corrected a piece of code that was reproduced twice · d6730027
  Jérôme Euzenat authored 18 years ago
  
  d6730027
Feb 08, 2007
- - suppressed 3.0 comments · bfd19451
  Jérôme Euzenat authored 18 years ago
  
  bfd19451
Feb 02, 2007
- - Large reengineering of code (no warning under gcj) · 88337698
  Jérôme Euzenat authored 18 years ago
  
  - Many small improvements of the AlignementServer - Complete reengineering of the API for version 3.0
  88337698
Nov 27, 2006
- - Put the main only as static (old story) · 14246cb6
  Jérôme Euzenat authored 18 years ago
  
  14246cb6
Oct 29, 2006
- - revised usage() · a0a16a50
  Jérôme Euzenat authored 18 years ago
  
  - checked use of stderr instead of stdout
  a0a16a50
Sep 21, 2006
- - improved LaTeX rendering of PRGRaphs (not perfect yet but close) · f19b66ed
  Jérôme Euzenat authored 18 years ago
  
  - cleaned up some copyright notices - investigated the PRGraph evaluator algorithm (and make it start at 1/0)
  f19b66ed
Jun 06, 2006
- - completed the timing facilities (and documentation) · 93b4e8af
  Jérôme Euzenat authored 18 years ago
  
  93b4e8af
May 19, 2006
- - changed the class name for default method · b63e0f76
  Jérôme Euzenat authored 18 years ago
  
  b63e0f76
Feb 17, 2006
- - suppressed comment · 46f272f4
  Jérôme Euzenat authored 19 years ago
  
  46f272f4
Oct 04, 2005
- - changed the parameter reading function so that it preserves parameters · d9db398f
  Jérôme Euzenat authored 19 years ago
  
  d9db398f
Sep 27, 2005
- - adapted code to multiple alignments (suppressed deprecated primitives) · bb3db49d
  Jérôme Euzenat authored 19 years ago
  
  bb3db49d
Jul 20, 2005

- added a parameter argument to the read method · 662afd2e

Jérôme Euzenat authored 19 years ago

- corrected a bug that made -p and -D option optional
- corrected a bug that made erasing the debug option with parameter file

662afd2e

Jun 21, 2005
- - consequence of 1.3 · 3cbec170
  Jérôme Euzenat authored 19 years ago
  
  - havinf GroupAlign and ProcAlign working
  3cbec170
Jun 15, 2005
- - updated BasicParameters.read() parameter reading is effective · c9006156
  Jérôme Euzenat authored 19 years ago
  
  c9006156
- - closed openned writers (this caused problems with GroupAlign) · 8ee3f164
  Jérôme Euzenat authored 19 years ago
  
  8ee3f164
Jun 06, 2005
- - reimplemented dynamic class loading in the correct way · 3b7ebd42
  Jérôme Euzenat authored 19 years ago
  
  3b7ebd42
May 20, 2005
- - Introduced the parameters file reading. · 3618d22b
  Jérôme Euzenat authored 19 years ago
  
  3618d22b
May 19, 2005
- - introduced parameters reading in basic parameters (from Vison) · 5cbcac2b
  Jérôme Euzenat authored 19 years ago
  
  - added option for reading parameter files in Procalign
  5cbcac2b
May 09, 2005
- - Changed to the new OWL API · ffd8b6d6
  Jérôme Euzenat authored 19 years ago
  
  - Updated the release notes
  ffd8b6d6
Dec 02, 2004
- - implemented Parameter reading in procalign · 90f537a7
  Jérôme Euzenat authored 20 years ago
  
  - improved parameters: printing declared
  90f537a7
Nov 23, 2004

- pre 1.2 · 1639d707

Jérôme Euzenat authored 20 years ago

- changed the cut signature and options (-T)
- changed the output descriptions (UTF-8)

1639d707

Nov 05, 2004
- - finally implemented the reading of the debug value as an int · 09f2fe74
  Jérôme Euzenat authored 20 years ago
  
  09f2fe74