- Introduced the parameters file reading.

build.xml

@@ -25,7 +25,7 @@
   <target name="init">
     <tstamp><format locale="fr,fr" pattern="dd/MM/yyyy" property="TODAY"/></tstamp>
     <property name="doing" value="running"/>
-    <property name="version" value="1.2"/>
+    <property name="version" value="1.3"/>
     <property name="date" value="${TODAY}"/>
     <property name="login" value="euzenat"/>
     <property name="email" value="Jerome.Euzenat@inrialpes.fr"/>

src/fr/inrialpes/exmo/align/util/Procalign.java

@@ -51,6 +51,7 @@ import org.semanticweb.owl.io.Parser;
 
 import java.io.OutputStream;
 import java.io.FileOutputStream;
+import java.io.FileInputStream;
 import java.io.PrintWriter;
 import java.io.BufferedWriter;
 import java.io.OutputStreamWriter;
@@ -163,6 +164,11 @@ public class Procalign {
 	    case 'p' :
 		/* Read parameters from filename */
 		paramfile = g.getOptarg();
+		try {
+		    FileInputStream fis = new FileInputStream( paramfile );
+		    System.setIn( fis );
+		} catch (Exception e) { e.printStackTrace(); }
+		params = (Parameters)BasicParameters.read();
 		break;
 	    case 'r' :
 		/* Use the given class for rendering */
@@ -209,10 +215,6 @@ public class Procalign {
 	
 	int i = g.getOptind();
 
-	// Read the param file here
-	// This should include redirecting input + this should be before
-	if ( paramfile != null ) params = (Parameters)BasicParameters.read();
-
 	loadedOntologies = new Hashtable();
 	if (debug > 0) params.setParameter("debug", new Integer(debug));
 	// debug = ((Integer)params.getParameter("debug")).intValue();