- cleaned up comments

src/fr/inrialpes/exmo/align/impl/BasicParameters.java

@@ -48,14 +48,14 @@ import org.semanticweb.owl.align.Parameters;
   * By default and for means of communication, parameter names and values 
   * are Strings (even if their type is Object).
   *
-  * [JE:2010] A note about unchecked warnings
+  * A note about unchecked warnings
   * java.util.Properties is declared as hashtable<Object,Object>
   * However all its accessors can only put String as key in the hashtable
   * But propertyNames returns Enumeration and not Enumeration<String>
   * Using keySet will not change anything, because it will be Set<Object>
   * Java 6 introduces Set<String> stringPropertyNames() !!
   *
-  * [JE:2010] This class implements Parameters for compatibility purposes.
+  * This class implements Parameters for compatibility purposes.
   * Parameters is only "morally" deprecated in the Alignment API, but it is
   * not used anymore.
   * 

src/fr/inrialpes/exmo/align/impl/eval/PRGraphEvaluator.java

@@ -60,8 +60,7 @@ import java.net.URI;
  * Otherwise, it would basically be:
  * SUM_c\in correct( P( c ) ) / nbexpected
  *
- * NOTE (JE:2010): This should be adapated for other notions of Precision and Recall
- * This is fully possible and will be done with 
+ * NOTE: This should be adapated for other notions of Precision and Recall
  *
  */
 
@@ -87,7 +86,7 @@ public class PRGraphEvaluator extends GraphEvaluator {
      * Compute precision and recall graphs.
      */
     public Vector<Pair> eval( Properties params ) { // throws AlignmentException
-	points = new Vector<Pair>(STEP+1); // 2010evaluate the size
+	points = new Vector<Pair>(STEP+1); 
 
 	if ( params != null && params.getProperty( "oldstyle" ) != null ) {
 	    return evalOldStyle();

src/fr/inrialpes/exmo/align/impl/eval/ThresholdGraphEvaluator.java

@@ -75,7 +75,7 @@ public class ThresholdGraphEvaluator extends GraphEvaluator {
      * 
      */
     public Vector<Pair> eval( Properties params ) { // throws AlignmentException
-	points = new Vector<Pair>(STEP+1); // 2010evaluate the size
+	points = new Vector<Pair>(STEP+1); 
 	opt = 0.;
 	int nbcorrect = 0;
 	int nbfound = 0;

src/fr/inrialpes/exmo/align/parser/RDFParser.java

@@ -149,16 +149,12 @@ public class RDFParser {
     public static void initSyntax() {
 	if ( rDFModel == null ) {
 	    rDFModel = ModelFactory.createDefaultModel();
-	    // The register is always initialised?
 	    for ( SyntaxElement el : SyntaxElement.values() ) {
-		// JE2010 This is incorrect because there can be Resources (classes)
-		// and/or Property ... They may all be resources...
 		if ( el.isProperty == true ) {
 		    el.resource = rDFModel.createProperty( el.id() );
 		} else {
 		    el.resource = rDFModel.createResource( el.id() );
 		}
-		//register.put( el.getName(), el );
 	    }
 	}
     }
@@ -441,7 +437,7 @@ public class RDFParser {
 		    rdfType.equals( SyntaxElement.PROPERTY_VALUE_COND.resource ) ) {
 	    result = parseProperty( node );
 	} else if ( rdfType.equals( SyntaxElement.RELATION_EXPR.resource ) ||
-		    rdfType.equals( SyntaxElement.RELATION_DOMAIN_COND.resource ) || // JE 2010: no chance
+		    rdfType.equals( SyntaxElement.RELATION_DOMAIN_COND.resource ) || // no chance
 		    rdfType.equals( SyntaxElement.RELATION_CODOMAIN_COND.resource ) ) {
 	    result = parseRelation( node );
 	} else if ( rdfType.equals( SyntaxElement.INSTANCE_EXPR.resource ) ) {

src/fr/inrialpes/exmo/align/parser/XMLParser.java

@@ -303,7 +303,6 @@ public class XMLParser extends DefaultHandler {
 		extensions = null;
 		cl1 = null;
 		cl2 = null;
-		// JE 2010: test that it works with SE [SEEMS TO WORK]
 	    } else if (pName.equals( SyntaxElement.MAP.name )) {//"map"
 		try {
 		    alignment.init( onto1, onto2 );