factorization and usefulness ?
https://gitlab.inria.fr/ml_genetics/private/robustness_pipeline/blob/master/bash_script/individual_Garga_and_postTreatment.sh#L67 should it be combined with the previous line ? i.e minQ, indel, min_allele, max_alleles in a single line
Are min_alleles max_alleles useful when processing a single individual? -> we don't think so