Commits · deec7447633f0cdce164cc5316d9d982ae1dc10a · LUISELLI Juliette / aevol-eukaryotes · GitLab

Mentions légales du service

Snippets Groups Projects

GitLab upgrade completed. Current version is 17.11.6.

Apr 08, 2024
- Correctly read and write the ReplicationReport in the eukaryotic case · deec7447
  LUISELLI Juliette authored 1 year ago
  
  deec7447
- adapt the init() of ReplicationReport to the eukaryotic case · 3cccb8a0
  LUISELLI Juliette authored 1 year ago
  
  3cccb8a0
- adapt stats computation to fit both eukaryotic and prokaryotic case in ReplicationReport · 3fa3dda5
  LUISELLI Juliette authored 1 year ago
  
  3fa3dda5
- Record recombinations_ in the Tree (from DnaReplicationReport) · 8a616bc8
  LUISELLI Juliette authored 1 year ago
  
  8a616bc8
- Correctly compute nb of recombinations_ in DnaReplicationReport · 2f01b85a
  LUISELLI Juliette authored 1 year ago
  
  2f01b85a
- correctly clone recombinations_ in DnaReplicationReport · 3483155c
  LUISELLI Juliette authored 1 year ago
  
  3483155c
- add function add_recomb to DnaReplicationReport · 39512c6a
  LUISELLI Juliette authored 1 year ago
  
  39512c6a
- add recombinations_ to DnaReplicationReport · 24d13a0d
  LUISELLI Juliette authored 1 year ago
  
  24d13a0d
Feb 23, 2024
- Loading the recombination parameters to MutationParams · d8e0a7b3
  LUISELLI Juliette authored 1 year ago
  
  d8e0a7b3
- storing param file recombination parameters to ParamValues · 03dd1e0b
  LUISELLI Juliette authored 1 year ago
  
  03dd1e0b
- Adding recombination parameters to ParamValues · 0ce598e5
  LUISELLI Juliette authored 1 year ago
  
  0ce598e5
- storing the selfing_rate into Selection for real · 6be6d958
  LUISELLI Juliette authored 1 year ago
  
  6be6d958
- storing the selfing_rate from the param file to ParamValues · 0c473d17
  LUISELLI Juliette authored 1 year ago
  
  0c473d17
- adding a selfing_rate to ParamValues · 885c650c
  LUISELLI Juliette authored 1 year ago
  
  885c650c
Dec 21, 2023
- WIP make indivs own a list of chromosomes · b7c4382c
  David Parsons authored 1 year ago
  b7c4382c
- read 2 sequences from sequence file · b2727fd7
  David Parsons authored 1 year ago
  b2727fd7
Dec 15, 2023
- pass chromosome to ParamLoader::load in a list of strings · 4a4d39ac
  David Parsons authored 1 year ago
  4a4d39ac
- hide sequence ownership transfer into ParamLoader::load · b254dd09
  David Parsons authored 1 year ago
  
  b254dd09
Nov 21, 2023
- move proteins_ from Individual_7 to AnnotatedChromosome · fdee237f
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  fdee237f
- move rnas from Individual_7 to AnnotatedChromosome · 59dbcc49
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  59dbcc49
- move dna_ to AnnotatedChromosome · d43bf477
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  d43bf477
- move variables for Tree mgmt to AnnotatedChromosome · 6390638a
  David Parsons authored 1 year ago
  6390638a
Nov 17, 2023
- remove Dump · 00c5310e
  David Parsons authored 1 year ago
  
  00c5310e
- add const to fun param · b5ffa165
  David Parsons authored 1 year ago
  
  b5ffa165
- add const to fn param · 12fd7347
  David Parsons authored 1 year ago
  
  12fd7347
- use snprintf instead of deprecated sprintf · 472c45f1
  David Parsons authored 1 year ago
  
  472c45f1
- use snprintf instead of deprecated sprintf · e82d890d
  David Parsons authored 1 year ago
  
  e82d890d
- remove LightTree · 3a17f881
  David Parsons authored 1 year ago
  
  3a17f881
- remove LightTree from OutputManager · 5be9dbae
  David Parsons authored 1 year ago
  5be9dbae
- remove stale function ReplicationReport::init(LightTree, ...) · 9f6bc3b1
  David Parsons authored 1 year ago
  9f6bc3b1
Sep 21, 2023
- add missing includes · 1041e40c
  David Parsons authored 1 year ago
  
  1041e40c
Jul 24, 2023
- add UserInterfaceOutput::write_environment_output · e45489b1
  David Parsons authored 2 years ago
  
  e45489b1
- add UserInterfaceOutput::write_grid_output · 905e234b
  David Parsons authored 2 years ago
  
  905e234b
- add UserInterfaceOutput::write_indiv_output() · 6ee98ee7
  David Parsons authored 2 years ago
  
  6ee98ee7
- add UserInterfaceOutput::nothing_to_output() · e0ce2b6e
  David Parsons authored 2 years ago
  
  e0ce2b6e
Jul 21, 2023
- add json support to UserInterfaceOutput · e3c36378
  David Parsons authored 2 years ago
  
  e3c36378
- add UserInterfaceOutput::frequency_ · e6ffb99f
  David Parsons authored 2 years ago
  
  e6ffb99f
- add UserInterfaceOutput::outdir_ · 89805d1c
  David Parsons authored 2 years ago
  
  89805d1c
Jul 18, 2023
- add class io/UserInterfaceOutput · 5d892ff9
  David Parsons authored 2 years ago
  
  5d892ff9
Jul 04, 2023
- remove MPI support · e079aeec
  David Parsons authored 2 years ago
  
  e079aeec