Commits · d59b6f18bdbedddb80ba2e4d135c518c716e0590 · LUISELLI Juliette / aevol-eukaryotes · GitLab

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Apr 08, 2024
- add nb_non_coding_RNAs function to Individual_7 · d59b6f18
  LUISELLI Juliette authored 1 year ago
  
  d59b6f18
- add dna_length function to Individual_7 · f2b5d962
  LUISELLI Juliette authored 1 year ago
  
  f2b5d962
- add informations to Individual_7 to be able to reconstruct from the Tree · ddbfe36c
  LUISELLI Juliette authored 1 year ago
  
  ddbfe36c
- second point for alignment is not random but physically near · 457aaf2f
  LUISELLI Juliette authored 1 year ago
  
  457aaf2f
- Perform recombination in parents instead of child · 31e90925
  LUISELLI Juliette authored 1 year ago
  
  31e90925
- Pass pointers to parents instead of parents · 88f6a24a
  LUISELLI Juliette authored 1 year ago
  88f6a24a
- find alignment on self instead of other chromosomes · ff4e25ae
  LUISELLI Juliette authored 1 year ago
  
  ff4e25ae
Feb 23, 2024
- Using the recombination parameters of MutationParams instead of hard-coded · 68d05485
  LUISELLI Juliette authored 1 year ago
  68d05485
- Adding the recombination at the sexual reproduction event · b83f4fbf
  LUISELLI Juliette authored 1 year ago
  
  b83f4fbf
- Add function get_pos_and_recombine · ea0a7c93
  LUISELLI Juliette authored 1 year ago
  ea0a7c93
- Add function do_recombination · 5849b47e
  LUISELLI Juliette authored 1 year ago
  5849b47e
- Add function find_alignment · 3c6d3f38
  LUISELLI Juliette authored 1 year ago
  3c6d3f38
- Add align_score function · e1a68a63
  LUISELLI Juliette authored 1 year ago
  e1a68a63
- add more assert to be sure · 99f25f12
  LUISELLI Juliette authored 1 year ago
  
  99f25f12
- Adding a random number generator to Individual_7 · 5abac7ad
  LUISELLI Juliette authored 1 year ago
  
  5abac7ad
- randomize the order of parental chromosomes · 3d25735f
  David Parsons authored 1 year ago and LUISELLI Juliette committed 1 year ago
  
  3d25735f
- copy the promoter_lists from parents to child when reproducing sexually · f8e396d1
  David Parsons authored 1 year ago and LUISELLI Juliette committed 1 year ago
  
  f8e396d1
- randomly choose which chromosome each parent will provide · ea9bd7eb
  David Parsons authored 1 year ago and LUISELLI Juliette committed 1 year ago
  
  ea9bd7eb
- add named ctor Individual_7::make_from_parents · 9fd17137
  David Parsons authored 1 year ago and LUISELLI Juliette committed 1 year ago
  
  9fd17137
Dec 21, 2023
- handle both chrsms in Individual_7::compute_protein · 225120fc
  David Parsons authored 1 year ago
  
  225120fc
- handle both chrsms in Individual_7::translate_protein · 17d132c6
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  17d132c6
- handle both chrsms in Individual_7::start_protein · 9f6d8232
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  9f6d8232
- handle both chrsms in Individual_7::prom_compute_RNA · 05e56413
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  05e56413
- handle both chrsms in Individual_7::start_stop_RNA · 27147887
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  27147887
- computes phenotype from both lists of proteins · 0fe093bb
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  0fe093bb
- add named ctor Individual_7::make_from_sequences · 48a50691
  David Parsons authored 1 year ago
  
  48a50691
- compute non-coding for both chrsms · 557e28d5
  David Parsons authored 1 year ago
  
  557e28d5
- use both chrsms in individual ctor and dtor · ba528f06
  David Parsons authored 1 year ago
  ba528f06
- WIP make indivs own a list of chromosomes · b7c4382c
  David Parsons authored 1 year ago
  b7c4382c
- add asserts in Individual_7::compute_protein · 71b44c06
  LUISELLI Juliette authored 2 years ago and David Parsons committed 1 year ago
  
  71b44c06
- WIP trying to manage prom_compute_RNA: · 307ffdec
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  307ffdec
- manage the first search of promoters · f3810a01
  LUISELLI Juliette authored 1 year ago and David Parsons committed 1 year ago
  
  f3810a01
Dec 12, 2023
- add named ctor Individual_7::make_from_sequence · 9a357101
  David Parsons authored 1 year ago
  
  9a357101
- remove duplicate init statement · fab5c19c
  David Parsons authored 1 year ago
  
  fab5c19c
- add params to legal Individual_7 ctor · 74b8fbde
  David Parsons authored 1 year ago
  
  74b8fbde
- release Dna from AnnotatedChromosome · 038a75a6
  David Parsons authored 1 year ago
  
  038a75a6
- manage DnaFactory through Dna · 470c6566
  David Parsons authored 1 year ago
  
  470c6566
- use type type Dna_7::size_type throughout Dna_7+ · da70f834
  David Parsons authored 1 year ago
  
  da70f834
- extract named ctor AnnotatedChromosome::make_clone · af99978b
  David Parsons authored 1 year ago
  
  af99978b
- merge embedded if statements · 84485649
  David Parsons authored 1 year ago
  
  84485649