Commits · cc28fee622f1dc13e73dafeaa16bc2d6344ca3af · LUISELLI Juliette / aevol-eukaryotes · GitLab

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Apr 08, 2024
- Adding the parameters NB_RECOMB to possibly have a number of recombinations above 1 · cc28fee6
  LUISELLI Juliette authored 11 months ago
  
  cc28fee6
- Recording the selfing rate at runtime · 6b9c32de
  LUISELLI Juliette authored 1 year ago
  
  6b9c32de
- adjusting post treatment pop_stats to record separately full pop and reproducers data · d52f509e
  LUISELLI Juliette authored 1 year ago
  
  d52f509e
- renaming POP_STATS param to MEAN_STATS · ff712177
  LUISELLI Juliette authored 1 year ago
  
  (we extract only mean values, not full pop)
  ff712177
- dirty add of global selection case · 8fd66ee8
  LUISELLI Juliette authored 1 year ago
  
  8fd66ee8
- fix post_pop_stats · fa1c0349
  LUISELLI Juliette authored 1 year ago
  
  fa1c0349
- new post-treatment: generate recombination maps data · 69736b5c
  LUISELLI Juliette authored 1 year ago
  
  69736b5c
- slightly less stupid alignment: allows for mismatch · 93bda6ce
  LUISELLI Juliette authored 1 year ago
  
  93bda6ce
- forgotten edit to CMakeLists · d75beb53
  LUISELLI Juliette authored 1 year ago
  
  d75beb53
- Create a new post-treatment to extract data about the whole population · 2a441751
  LUISELLI Juliette authored 1 year ago
  
  2a441751
- Allows to extract only the genome of the reproducers · 1ac27674
  LUISELLI Juliette authored 1 year ago
  
  1ac27674
- separate chrsm by newline in extract · 35cd2d05
  LUISELLI Juliette authored 1 year ago
  
  35cd2d05
- Splitting stats on big and small chrsm · 9522c9cb
  LUISELLI Juliette authored 1 year ago
  
  9522c9cb
- Adding option pop_stats_step to not record pop_stats every generation · 8a22d6e9
  LUISELLI Juliette authored 1 year ago
  
  8a22d6e9
- TMP complexify recombination stats · 475077e7
  LUISELLI Juliette authored 1 year ago
  
  475077e7
- TMP default non-coding computation · 119cc6e5
  LUISELLI Juliette authored 1 year ago
  
  119cc6e5
- record chrsm B kinda separately · d3ffd486
  LUISELLI Juliette authored 1 year ago
  
  d3ffd486
- record json for both chrsm · d8fb14d8
  LUISELLI Juliette authored 1 year ago
  
  d8fb14d8
- TMP fix bad assert at VectorFuzzy · 794704e7
  LUISELLI Juliette authored 1 year ago
  
  794704e7
- Condition saving of population stats to pop_stats_ instead of __EUKARYOTE · b6bd8bb2
  LUISELLI Juliette authored 1 year ago
  
  b6bd8bb2
- retrieving pop_stats_ in aevol 7 · 47602f70
  LUISELLI Juliette authored 1 year ago
  
  47602f70
- Loading pop_stats_ to exp_s to save it · cbc5b808
  LUISELLI Juliette authored 1 year ago
  
  cbc5b808
- reading file to load POP_STATS to ParamValues · 903cd367
  LUISELLI Juliette authored 1 year ago
  
  903cd367
- Adding pop_stats param to ParamValues · 4824a66e
  LUISELLI Juliette authored 1 year ago
  
  4824a66e
- actually writing the pop stats during the simulation · e8541cc8
  LUISELLI Juliette authored 1 year ago
  
  e8541cc8
- Changing the data we record in eukaryote mode · 4ac06a66
  LUISELLI Juliette authored 1 year ago
  
  4ac06a66
- Computes ONLY the actually used non-coding value · 514ba9b3
  LUISELLI Juliette authored 1 year ago
  
  514ba9b3
- FIX: a lagging protein can end on the very first base of the genome · 13116325
  LUISELLI Juliette authored 1 year ago
  
  13116325
- allowing to create random individuals at create · 4cf3d40e
  LUISELLI Juliette authored 1 year ago
  
  4cf3d40e
- fix undefined var in prok mode · 6ea07b20
  LUISELLI Juliette authored 1 year ago
  
  6ea07b20
- fix bad position to count the nb of recombinations, and fix array size · 06d8151b
  LUISELLI Juliette authored 1 year ago
  
  06d8151b
- Correctly read and write the ReplicationReport in the eukaryotic case · deec7447
  LUISELLI Juliette authored 1 year ago
  
  deec7447
- adapt the init() of ReplicationReport to the eukaryotic case · 3cccb8a0
  LUISELLI Juliette authored 1 year ago
  
  3cccb8a0
- adapt stats computation to fit both eukaryotic and prokaryotic case in ReplicationReport · 3fa3dda5
  LUISELLI Juliette authored 1 year ago
  
  3fa3dda5
- add nb_genes_activ function to Individual_7 · 69ebb8f3
  LUISELLI Juliette authored 1 year ago
  
  69ebb8f3
- add nb_genes_inhib to Individual_7 · 45414c58
  LUISELLI Juliette authored 1 year ago
  
  45414c58
- add nb_func_genes to Individual_7 · 9cbebadc
  LUISELLI Juliette authored 1 year ago
  
  9cbebadc
- add nb_coding_RNAs function to Individual_7 · 4a4b16a7
  LUISELLI Juliette authored 1 year ago
  
  4a4b16a7
- add nb_non_coding_RNAs function to Individual_7 · d59b6f18
  LUISELLI Juliette authored 1 year ago
  
  d59b6f18
- add dna_length function to Individual_7 · f2b5d962
  LUISELLI Juliette authored 1 year ago
  
  f2b5d962