Commits · 4cf3d40e055b08a97ba16c0bbca7cd7fd94b4ff5 · LUISELLI Juliette / aevol-eukaryotes · GitLab

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Apr 08, 2024
- allowing to create random individuals at create · 4cf3d40e
  LUISELLI Juliette authored 1 year ago
  
  4cf3d40e
- fix undefined var in prok mode · 6ea07b20
  LUISELLI Juliette authored 1 year ago
  
  6ea07b20
- fix bad position to count the nb of recombinations, and fix array size · 06d8151b
  LUISELLI Juliette authored 1 year ago
  
  06d8151b
- Correctly read and write the ReplicationReport in the eukaryotic case · deec7447
  LUISELLI Juliette authored 1 year ago
  
  deec7447
- adapt the init() of ReplicationReport to the eukaryotic case · 3cccb8a0
  LUISELLI Juliette authored 1 year ago
  
  3cccb8a0
- adapt stats computation to fit both eukaryotic and prokaryotic case in ReplicationReport · 3fa3dda5
  LUISELLI Juliette authored 1 year ago
  
  3fa3dda5
- add nb_genes_activ function to Individual_7 · 69ebb8f3
  LUISELLI Juliette authored 1 year ago
  
  69ebb8f3
- add nb_genes_inhib to Individual_7 · 45414c58
  LUISELLI Juliette authored 1 year ago
  
  45414c58
- add nb_func_genes to Individual_7 · 9cbebadc
  LUISELLI Juliette authored 1 year ago
  
  9cbebadc
- add nb_coding_RNAs function to Individual_7 · 4a4b16a7
  LUISELLI Juliette authored 1 year ago
  
  4a4b16a7
- add nb_non_coding_RNAs function to Individual_7 · d59b6f18
  LUISELLI Juliette authored 1 year ago
  
  d59b6f18
- add dna_length function to Individual_7 · f2b5d962
  LUISELLI Juliette authored 1 year ago
  
  f2b5d962
- add informations to Individual_7 to be able to reconstruct from the Tree · ddbfe36c
  LUISELLI Juliette authored 1 year ago
  
  ddbfe36c
- Use correct NewIndivEvent at run time in ExpManager_7 · 03d1d8af
  LUISELLI Juliette authored 1 year ago
  
  03d1d8af
- adapt NewIndivEvent to the eukaryotic case · 499d916b
  LUISELLI Juliette authored 1 year ago
  
  499d916b
- remove unadapted watch for new Individuals in the eukaryotic case · f968fdcc
  LUISELLI Juliette authored 1 year ago
  
  f968fdcc
- Record recombinations at run time in ExpManager_7 · 60c44687
  LUISELLI Juliette authored 1 year ago
  
  60c44687
- Record recombinations_ in the Tree (from DnaReplicationReport) · 8a616bc8
  LUISELLI Juliette authored 1 year ago
  
  8a616bc8
- Correctly compute nb of recombinations_ in DnaReplicationReport · 2f01b85a
  LUISELLI Juliette authored 1 year ago
  
  2f01b85a
- correctly clone recombinations_ in DnaReplicationReport · 3483155c
  LUISELLI Juliette authored 1 year ago
  
  3483155c
- add function add_recomb to DnaReplicationReport · 39512c6a
  LUISELLI Juliette authored 1 year ago
  
  39512c6a
- add recombinations_ to DnaReplicationReport · 24d13a0d
  LUISELLI Juliette authored 1 year ago
  
  24d13a0d
- Create the Recombination mutation (to save in the Tree) · cb0a1fd3
  LUISELLI Juliette authored 1 year ago
  
  cb0a1fd3
- Add RECOMB mutation type · 25376c39
  LUISELLI Juliette authored 1 year ago
  
  25376c39
- save and retrieve chrsm_ information to Tree for Small Insertions · 84c36601
  LUISELLI Juliette authored 1 year ago
  
  84c36601
- save and retrieve chrsm_ information to Tree for Small Deletions · 364497e1
  LUISELLI Juliette authored 1 year ago
  
  364497e1
- save and retrieve chrsm_ information to Tree for Point Mutations · 7344dc12
  LUISELLI Juliette authored 1 year ago
  
  7344dc12
- save and retrieve chrsm_ information to Tree for Inversions · 7b6a21d0
  LUISELLI Juliette authored 1 year ago
  
  7b6a21d0
- save and retrieve chrsm_ information to Tree for Duplications · 8ac6f51f
  LUISELLI Juliette authored 1 year ago
  
  8ac6f51f
- save and retrieve chrsm_ information to Tree for Deletions · 3fb20c80
  LUISELLI Juliette authored 1 year ago
  
  3fb20c80
- pass chrsm information from MutationEvent to Mutation.h · 13fde8a0
  LUISELLI Juliette authored 1 year ago
  
  13fde8a0
- add chrsm_ member to Mutation.h · 9683726e
  LUISELLI Juliette authored 1 year ago
  
  9683726e
- Record mutations from chromosome B too · bcae94fe
  LUISELLI Juliette authored 1 year ago
  
  bcae94fe
- fix useless operations when in eukaryotic mode · 577556c6
  LUISELLI Juliette authored 1 year ago
  
  577556c6
- pass chrsm_ from DnaMutator to MutationEvent · 7034a160
  LUISELLI Juliette authored 1 year ago
  
  7034a160
- add chrsm_ member to MutationEvent.h · 5c035b3d
  LUISELLI Juliette authored 1 year ago
  
  5c035b3d
- add chrsm_ member to DnaMutator · e596b6e9
  LUISELLI Juliette authored 1 year ago
  
  e596b6e9
- second point for alignment is not random but physically near · 457aaf2f
  LUISELLI Juliette authored 11 months ago
  
  457aaf2f
- Perform recombination in parents instead of child · 31e90925
  LUISELLI Juliette authored 11 months ago
  
  31e90925
- Pass pointers to parents instead of parents · 88f6a24a
  LUISELLI Juliette authored 11 months ago
  
  transitory state, won’t compile
  88f6a24a