It was not used and the performance was too poor

This commit updates the Utils::PrintAevolVersion() method to use the
detailed version string provided in aevol::version_string.

This commit adds the build type (Release or Debug) to the detailed commit
info introduced in ee8f2200, in order to simplify later extraction of
this data from the output.

It is obtained by printing the $CMAKE_BUILD_TYPE CMake variable.

[aevol] Print compile commit branch, hash and date

See merge request aevol/aevol!30

This commit adds the ability to get the branch, date and hash of the
commit that was used to compile Aevol from within the C++ source of Aevol.

This is useful because it allows us to print it (for example) at the
beginning of the execution of one of the Aevol programs, making it
easier to see whether we're running the right version.

In order to do this, a special file `aevol_version.cpp.in` is introduced.
This file is modified by CMake a first time at configure time, replacing
a placeholder with the value of the PROJECT_VERSION CMake variable, and
a second time at compile time, replacing a placeholder with a custom
CMake variable that holds the branch, hash and date.

This turns the file into a regular C++ source file, that is then compiled
and linked with the rest of Aevol through the `aevol_version.h` header.

Finally, we print this string in the two most commonly used Aevol
executables, `aevol_create` and `aevol_run`.

[IOJson.cpp] W_max parameter correctly implemented

See merge request aevol/aevol!29

Import neutral mutations experiments post treatement

See merge request aevol/aevol!28

names of files depend on input file name and seed of simulation

[aevol_post_change_size_neutral_mut.cpp] output file individual has now the genetique sequence of the last individual of the post treatement simulation

change option char of wanted_size from "S" to "l" (for wanted sequence length) to avoid similar option char with seed option

Mr clean

See merge request aevol/aevol!27

Point was copied in the for loop, then the value inside the set
was never modified. This commit fix this problem.

In methode `check_result`:
+ remove warning about dangling else branch.
+ give alias to the individuals of version 6 and version 7 to add clarity
and context in the code

Toward simplifying ExpManager_7 to handle only the evolution.
The idea is to put all the IO outside the class.
This Commit simplify the run_a_step method.

ROUZAUD-CORNABAS Jonathan authored 4 years ago and TURPIN Laurent committed 4 years ago

They should not change anything but some of them could have been the cause of some bugs

Beware, this commit do not affect RAevol code