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Machine learning for population genetics
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Updated date
Plugin interface improvements: load config schemas from plugins
dnadna!67
· created
Mar 30, 2021
by
E. Madison Bray
Release 1.0.0
priority: medium
type: enhancement
type: refactoring
Merged
1
updated
Mar 31, 2021
[refactoring] make a base class for SNPSample and make it a pluggable
dnadna!68
· created
Mar 31, 2021
by
E. Madison Bray
Release 1.0.0
component: datasets
type: refactoring
Merged
0
updated
Apr 01, 2021
Implement lazy-loading of SNPSamples
dnadna!45
· created
Oct 27, 2020
by
E. Madison Bray
component: datasets
component: prediction
type: enhancement
Merged
Approved
1
9
updated
Apr 06, 2021
Remove torchvision dependency
dnadna!69
· created
Apr 01, 2021
by
E. Madison Bray
Release 1.0.0
Merged
5
updated
Apr 06, 2021
Rework dataset configuration
dnadna!71
· created
Apr 02, 2021
by
E. Madison Bray
Release 1.0.0
component: config
component: datasets
type: refactoring
Merged
0
updated
Apr 06, 2021
Allow plugin classes to keep track of which plugin module provided them
dnadna!73
· created
Apr 06, 2021
by
E. Madison Bray
Release 1.0.0
component: config
type: refactoring
Merged
0
updated
Apr 06, 2021
[ci] disable shallow clones in CI
dnadna!75
· created
Apr 09, 2021
by
E. Madison Bray
Release 1.0.0
component: ci
type: bug
Merged
2
updated
Apr 09, 2021
[ci] just disable shallow checkout warning from setuptools_scm when running in CI
dnadna!77
· created
Apr 09, 2021
by
E. Madison Bray
component: ci
type: bug
Merged
0
updated
Apr 09, 2021
Fix slight bug in README.md tests
dnadna!78
· created
Apr 09, 2021
by
E. Madison Bray
Release 1.0.0
type: bug
Merged
0
updated
Apr 09, 2021
Reworked transform configuration from #68
dnadna!70
· created
Apr 02, 2021
by
E. Madison Bray
Release 1.0.0
component: config
component: datasets
component: training
priority: high
type: refactoring
Merged
4
updated
Apr 10, 2021
Use docker-in-docker (dind) for docker builds
dnadna!80
· created
Apr 12, 2021
by
E. Madison Bray
Release 1.0.0
component: ci
priority: high
type: task
Merged
2
updated
Apr 12, 2021
[documentation] update links in the readme to reference the public repository
dnadna!76
· created
Apr 09, 2021
by
E. Madison Bray
Release 1.0.0
component: documentation
type: task
Merged
1
updated
Apr 12, 2021
[enhancement][doc] illustrating how to convert treesequences to npz dnadna format
dnadna!84
· created
Apr 14, 2021
by
JAY Flora
Merged
2
updated
Apr 14, 2021
[doc][enhancement] clarifying installation commands for simple user
dnadna!81
· created
Apr 13, 2021
by
JAY Flora
Merged
Approved
1
9
updated
Apr 15, 2021
Removal of unpublished nets.
dnadna!83
· created
Apr 14, 2021
by
Jean Cury
Merged
Approved
15
updated
Apr 15, 2021
Make installation of the dnadna conda environment the primary recommended way to install
dnadna!85
· created
Apr 15, 2021
by
E. Madison Bray
component: documentation
Merged
1
updated
Apr 15, 2021
Miscellaneous documentation fixes
dnadna!86
· created
Apr 15, 2021
by
E. Madison Bray
component: documentation
type: bug
Merged
5
updated
Apr 15, 2021
Miscellaneous documentation updates
dnadna!87
· created
May 10, 2021
by
E. Madison Bray
Release 1.0.0
component: documentation
Merged
0
updated
May 10, 2021
change network configuration in the training config as well as in the .pth file for the model
dnadna!89
· created
May 19, 2021
by
E. Madison Bray
Release 1.0.0
component: config
component: nets
priority: high
type: refactoring
Merged
2
updated
May 19, 2021
[enhancement] better consistency in how output model filenames are formatted
dnadna!92
· created
May 26, 2021
by
E. Madison Bray
Release 1.0.0
component: prediction
component: training
type: enhancement
Merged
0
updated
May 28, 2021
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