Commits · b42d61cc18cb9ac72528c8094173e7ba6f83b248 · DEBREUVE Eric / NutriMorph

Apr 17, 2020
- small corrections · b42d61cc
  NADAL Morgane authored 4 years ago
  
  b42d61cc
Apr 16, 2020
- Graphs constructed - for the moment, use FindRootsWithNodes instead of FindRootsWithEdges · 5da5797f
  NADAL Morgane authored 4 years ago
  
  5da5797f
- annotations and cleansing in nutrimorph.py · 4219ab99
  NADAL Morgane authored 4 years ago
  
  4219ab99
Apr 15, 2020
- Find roots - some corrections · 72bdbce1
  NADAL Morgane authored 4 years ago
  
  72bdbce1
Apr 14, 2020
- Find roots · 29d45155
  NADAL Morgane authored 4 years ago
  
  29d45155
Apr 10, 2020

still under dvpt = alternative fct for finding the roots of the graphs · bd45f838

NADAL Morgane authored 4 years ago

issue with the use of ext_nfo['lmp'] solved by deleting 0s during the search of the ext uid with np.where(site>0)
now working on root storage in the graph/edge/node attributes

bd45f838

minor bug solving + still working on graph roots extraction · f33b81f9

NADAL Morgane authored 4 years ago

pb with ext_nfo["lmp"] which do not contain the connexion, making not possible its use for graphs and root extraction

f33b81f9

Apr 09, 2020
- small annotations · 54b1d162
  NADAL Morgane authored 4 years ago
  
  54b1d162
- Changed MIP fct (not using SimpleITK anymore) · 801bc197
  NADAL Morgane authored 4 years ago
  
  801bc197
Apr 08, 2020
- Step3 : added the soma and ext id to root node attributes · 856559c7
  NADAL Morgane authored 4 years ago
  
  + nutrimorph.py setting
  856559c7
Apr 07, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 698fdeb5
  NADAL Morgane authored 4 years ago
  
  698fdeb5
Apr 06, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 882ef02a
  NADAL Morgane authored 4 years ago
  
  882ef02a
- STEP2 = GRAPHS EXTRACTION: use SKL graph to only extract the {ext + conn} as graph · a90ec39c
  NADAL Morgane authored 4 years ago
  
  a90ec39c
Apr 04, 2020
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas... · ccebbf37
  NADAL Morgane authored 4 years ago
  
  STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root [[coord: tuple{3}, idx: int]]
  ccebbf37
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root · ed98057d
  NADAL Morgane authored 4 years ago
  
  ed98057d
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 4 years ago
  
  81f6e4a0
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 4 years ago
  
  96d784c3
Mar 24, 2020
- some refactoring + added sklgraph · 7fef4f65
  NADAL Morgane authored 4 years ago
  
  7fef4f65
Mar 23, 2020
- some minor modifications · e70f8f49
  NADAL Morgane authored 4 years ago
  
  e70f8f49
- parameters.py -> search_parameters.py: search parameters from.INI file · 22f5113c
  NADAL Morgane authored 5 years ago
  
  22f5113c
Mar 21, 2020
- Used configparser to link parameters.ini to nutrimorph.py · 066dfc31
  NADAL Morgane authored 5 years ago
  
  066dfc31
- Used configparser to link parameters.ini to nutrimorph.py · 76d5eb83
  NADAL Morgane authored 5 years ago
  
  76d5eb83
Mar 20, 2020
- killed the bug leading to no ext detected (relabel fct!) · 4f7877ca
  NADAL Morgane authored 5 years ago
  
  4f7877ca
- last modif to ToPixel (usable for dist, area, volume) · 54fbde26
  NADAL Morgane authored 5 years ago
  
  54fbde26
- corrected error in ToPixel · 87d5683e
  NADAL Morgane authored 5 years ago
  
  87d5683e
Mar 19, 2020
- corrected bugs in image_verification.py · 78cca4dc
  NADAL Morgane authored 5 years ago
  
  78cca4dc
Mar 18, 2020
- Created PySide2 Image Verification algo (still some bugs!!) · 56ee3805
  NADAL Morgane authored 5 years ago
  
  56ee3805
Mar 17, 2020
- dealt with parameters issues (pixel-micron + arguments in fct) + some refactoring · d84ad67e
  NADAL Morgane authored 5 years ago
  
  d84ad67e
Mar 13, 2020
- refactoring · 56c71b36
  NADAL Morgane authored 5 years ago
  
  56c71b36
- modif FindVoxelDimensionInMicrons() w/ re expression + try-except · 3b79f558
  NADAL Morgane authored 5 years ago
  
  3b79f558
Mar 11, 2020
- modified selem (in micron) in prms + in other fcts · cdcc8f12
  NADAL Morgane authored 5 years ago
  
  cdcc8f12
- modified selem (in micron) in prms + in other fcts · c753b56b
  NADAL Morgane authored 5 years ago
  
  c753b56b
- fct for intensity normalization and find voxel dimension in micron + refractoring · a7220a24
  NADAL Morgane authored 5 years ago
  
  a7220a24
Mar 10, 2020
- wrote fct for relative intensity image normalization + refractoring · baae4068
  NADAL Morgane authored 5 years ago
  
  baae4068
Mar 09, 2020
- changed label into relabel + max - modified Filtered Maps · 3ff4cecf
  NADAL Morgane authored 5 years ago
  
  3ff4cecf
- Added the dijkstra and frangi algo (not the link). · 7745e79b
  NADAL Morgane authored 5 years ago
  
  Added an algorithm for the verification for image dimension and coherence with the parameter channel. No user interface yet because of a bug in PySide2.
  7745e79b
- added Morgane as contributor · d1519363
  DEBREUVE Eric authored 5 years ago
  
  d1519363
Mar 08, 2020
- refactoring · 445f2be8
  DEBREUVE Eric authored 5 years ago
  
  445f2be8
Mar 06, 2020
- recfactoring · 2e524b41
  DEBREUVE Eric authored 5 years ago
  
  2e524b41
Feb 26, 2020
- some refactoring · 3fbfbea8
  DEBREUVE Eric authored 5 years ago
  
  3fbfbea8