Commits · 9bd73062f4bc9ef7af5511ab008bff3aaca271f7 · DEBREUVE Eric / NutriMorph

Mar 25, 2021
- attempt to implement auto image resizing with wdw · 9bd73062
  DEBREUVE Eric authored 3 years ago
  
  9bd73062
Mar 23, 2021
- added mip axis selection · ccba4cd5
  DEBREUVE Eric authored 3 years ago
  
  ccba4cd5
Mar 22, 2021
- added gfp image · f1671d52
  DEBREUVE Eric authored 3 years ago
  
  f1671d52
Mar 16, 2021
- added matplotlib colormap-based mip coloring · 6f5f04c4
  DEBREUVE Eric authored 4 years ago
  
  6f5f04c4
- alternative metadata processing (but not activated yet) · 664c9253
  DEBREUVE Eric authored 4 years ago
  
  664c9253
- large refactoring · 3f530135
  DEBREUVE Eric authored 4 years ago
  
  3f530135
Mar 12, 2021
- added label for cursor info · acda0f74
  DEBREUVE Eric authored 4 years ago
  
  acda0f74
- refactored soma validation interface + color · 1f68b7fd
  DEBREUVE Eric authored 4 years ago
  
  1f68b7fd
Mar 11, 2021
- added basic soma validation interface · 1b41ed0e
  DEBREUVE Eric authored 4 years ago
  
  1b41ed0e
Feb 03, 2021
- adaptation to local env · 2e57a10e
  DEBREUVE Eric authored 4 years ago
  
  2e57a10e
Jul 23, 2020
- small corrections · 2601a1b2
  NADAL Morgane authored 4 years ago
  
  2601a1b2
- small corrections · 6c2466b6
  NADAL Morgane authored 4 years ago
  
  6c2466b6
Jul 15, 2020
- new plotting options to discriminate features based on the kmeans clusters · ab5192ae
  NADAL Morgane authored 4 years ago
  
  ab5192ae
- new plotting options to discriminate features based on the kmeans clusters · 904906c0
  NADAL Morgane authored 4 years ago
  
  904906c0
Jul 06, 2020
- improved features_analysis.py and add new parameter to nutrimorph.py · 7b24a676
  NADAL Morgane authored 4 years ago
  
  7b24a676
Jul 03, 2020
- usable version of dilatation/erosion during connexion of extensions · 44e96ffb
  NADAL Morgane authored 4 years ago
  
  44e96ffb
- dvpt of algo helping feature selection · 44c1e086
  NADAL Morgane authored 4 years ago
  
  44c1e086
Jul 01, 2020
- dvpt of algo helping feature selection · e1cccbf8
  NADAL Morgane authored 4 years ago
  
  e1cccbf8
Jun 30, 2020
- PCA and KMeans functional · 9046d6ce
  NADAL Morgane authored 4 years ago
  
  9046d6ce
- dvpt pca · 8fedfebd
  NADAL Morgane authored 4 years ago
  
  8fedfebd
- small correction to delete NaN in pd df · 98cd4399
  NADAL Morgane authored 4 years ago
  
  98cd4399
Jun 29, 2020
- usable version with choice btw w or wo dilatation/erosion. · df243383
  NADAL Morgane authored 4 years ago
  
  For the moment, more relevant results (biologically speaking) without dilatation/erosion.
  df243383
Jun 26, 2020
- EROSION/DILATATION during connexion: added possibility to choose between 2... · c5b6acb2
  NADAL Morgane authored 4 years ago
  
  EROSION/DILATATION during connexion: added possibility to choose between 2 erosion conditions. The strict one seems to be best (strict_erosion=True)
  c5b6acb2
- solved bug: singular matrices in best fitting ellipsoid · 6f64d820
  NADAL Morgane authored 4 years ago
  
  6f64d820
Jun 25, 2020
- solved EROSION/DILATATION bug · 1e026ed9
  NADAL Morgane authored 4 years ago
  
  1e026ed9
- handle singular matrices · 4d83b318
  NADAL Morgane authored 4 years ago
  
  4d83b318
Jun 24, 2020
- modif · 685f23fe
  NADAL Morgane authored 4 years ago
  
  685f23fe
- some modifs + new prms · 4e8095db
  NADAL Morgane authored 4 years ago
  
  4e8095db
- dvpt of the statistical and clustering analysis algos · 365a513d
  NADAL Morgane authored 4 years ago
  
  365a513d
- added soma uid to feature df · 8f32100b
  NADAL Morgane authored 4 years ago
  
  8f32100b
Jun 23, 2020
- minor modifications · 2b2747d4
  NADAL Morgane authored 4 years ago
  
  2b2747d4
- change the output dataframe to ease statistical analysis · 999c0a99
  NADAL Morgane authored 4 years ago
  
  999c0a99
- improve interface & prms · 2a162674
  NADAL Morgane authored 4 years ago
  
  2a162674
- add try/except for better dvpt · ae39797d
  NADAL Morgane authored 4 years ago
  
  ae39797d
Jun 22, 2020

solved BIG BUG: tangency of extensions and connexions leading to... · 9f4cdf48

NADAL Morgane authored 4 years ago

solved BIG BUG: tangency of extensions and connexions leading to "deskeletonization" and sklgraph incoherence with python objects

9f4cdf48

Jun 17, 2020
- solved BUG: free ext in cell graph · 0ac4c20d
  NADAL Morgane authored 4 years ago
  
  0ac4c20d
Jun 15, 2020
- solved soma_volume/convex_hull_volume issue · 522209af
  NADAL Morgane authored 4 years ago
  
  522209af
- solved soma_volume/convex_hull_volume issue · d3df13f8
  NADAL Morgane authored 4 years ago
  
  d3df13f8
Jun 12, 2020
- Format update: NutriMorph can be run on a file or on multiple files within repositories · 62d76ae3
  NADAL Morgane authored 4 years ago
  
  62d76ae3
- update: prm differenciation mode in frangi --> indirect · 5256359b
  NADAL Morgane authored 4 years ago
  
  5256359b