Commits · 7b24a67690eba358c7662c6665975b53e9526f74 · DEBREUVE Eric / NutriMorph

Jul 06, 2020
- improved features_analysis.py and add new parameter to nutrimorph.py · 7b24a676
  NADAL Morgane authored 4 years ago
  
  7b24a676
Jul 03, 2020
- usable version of dilatation/erosion during connexion of extensions · 44e96ffb
  NADAL Morgane authored 4 years ago
  
  44e96ffb
Jun 29, 2020
- usable version with choice btw w or wo dilatation/erosion. · df243383
  NADAL Morgane authored 4 years ago
  
  For the moment, more relevant results (biologically speaking) without dilatation/erosion.
  df243383
Jun 24, 2020
- some modifs + new prms · 4e8095db
  NADAL Morgane authored 4 years ago
  
  4e8095db
Jun 23, 2020
- change the output dataframe to ease statistical analysis · 999c0a99
  NADAL Morgane authored 4 years ago
  
  999c0a99
- improve interface & prms · 2a162674
  NADAL Morgane authored 4 years ago
  
  2a162674
- add try/except for better dvpt · ae39797d
  NADAL Morgane authored 4 years ago
  
  ae39797d
Jun 22, 2020

solved BIG BUG: tangency of extensions and connexions leading to... · 9f4cdf48

NADAL Morgane authored 4 years ago

solved BIG BUG: tangency of extensions and connexions leading to "deskeletonization" and sklgraph incoherence with python objects

9f4cdf48

Jun 17, 2020
- solved BUG: free ext in cell graph · 0ac4c20d
  NADAL Morgane authored 4 years ago
  
  0ac4c20d
Jun 12, 2020
- Format update: NutriMorph can be run on a file or on multiple files within repositories · 62d76ae3
  NADAL Morgane authored 4 years ago
  
  62d76ae3
- update: prm differenciation mode in frangi --> indirect · 5256359b
  NADAL Morgane authored 4 years ago
  
  5256359b
- small correction · 40ccd520
  NADAL Morgane authored 4 years ago
  
  40ccd520
Jun 11, 2020
- Annotated the whole Nutrimorph script, except specific fcts in Frangi, Dijkstra and SKLGraph. · d4054214
  NADAL Morgane authored 4 years ago
  
  d4054214
Jun 08, 2020
- some modifs · 4cadf915
  NADAL Morgane authored 4 years ago
  
  4cadf915
- delete too big somas · 5a3fbfdc
  NADAL Morgane authored 4 years ago
  
  + under dev: delete too big extensions
  5a3fbfdc
Jun 05, 2020
- solved hysteresis bug - still in dvpt · c7b23f47
  NADAL Morgane authored 4 years ago
  
  c7b23f47
- working on hysteresis bug · 4a5d39df
  NADAL Morgane authored 4 years ago
  
  4a5d39df
May 18, 2020
- possibility to choose the boundaries for the histograms · 24399934
  NADAL Morgane authored 4 years ago
  
  24399934
May 14, 2020
- bugs correction · 8105237d
  NADAL Morgane authored 4 years ago
  
  8105237d
- errors correction - graph features extraction completed · 1c3e0601
  NADAL Morgane authored 4 years ago
  
  1c3e0601
May 07, 2020
- dealt with hysteresis pb + added features: · 6e2a11eb
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  6e2a11eb
- dealt with hysteresis pb + added features: · a09e72c6
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  a09e72c6
May 05, 2020
- added hist lengths and thickness features · 1a094725
  NADAL Morgane authored 4 years ago
  
  1a094725
Apr 29, 2020
- improved extensions lengths hist · 4d255a79
  NADAL Morgane authored 4 years ago
  
  4d255a79
Apr 27, 2020

added soma features (volume + working on best fitting ellipsoid axes) +... · 09937e58

NADAL Morgane authored 4 years ago

added soma features (volume + working on best fitting ellipsoid axes) + modified skl brick.edge algo to support None value for calculus of edge lengths

09937e58

Apr 24, 2020
- tests frangi time and memory usage + frangi prms · 658a41a1
  NADAL Morgane authored 4 years ago
  
  658a41a1
Apr 23, 2020
- tests frangi time usage · d5cb64d0
  NADAL Morgane authored 4 years ago
  
  d5cb64d0
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 4 years ago
  
  81f6e4a0
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 4 years ago
  
  96d784c3
- Revert "added Frangi prms + README to parameters.ini" · 5649134d
  NADAL Morgane authored 5 years ago
  
  This reverts commit efbce256
  5649134d
- added Frangi prms + README to parameters.ini · efbce256
  NADAL Morgane authored 5 years ago
  
  efbce256
Mar 23, 2020
- parameters.py -> search_parameters.py: search parameters from.INI file · 22f5113c
  NADAL Morgane authored 5 years ago
  
  22f5113c
Mar 21, 2020
- Used configparser to link parameters.ini to nutrimorph.py · 76d5eb83
  NADAL Morgane authored 5 years ago
  
  76d5eb83
Mar 20, 2020
- corrected error in ToPixel · 87d5683e
  NADAL Morgane authored 5 years ago
  
  87d5683e
Mar 18, 2020
- Created PySide2 Image Verification algo (still some bugs!!) · 56ee3805
  NADAL Morgane authored 5 years ago
  
  56ee3805
Mar 17, 2020
- dealt with parameters issues (pixel-micron + arguments in fct) + some refactoring · d84ad67e
  NADAL Morgane authored 5 years ago
  
  d84ad67e
Mar 16, 2020
- created parameters.ini file (todo: clean up) + still working on PySide2 for ImageVerification() · 110f487c
  NADAL Morgane authored 5 years ago
  
  110f487c
Mar 13, 2020
- refactoring · 56c71b36
  NADAL Morgane authored 5 years ago
  
  56c71b36
- modif FindVoxelDimensionInMicrons() w/ re expression + try-except · 3b79f558
  NADAL Morgane authored 5 years ago
  
  3b79f558
Mar 11, 2020
- modified selem (in micron) in prms + in other fcts · c753b56b
  NADAL Morgane authored 5 years ago
  
  c753b56b