Commits · 698fdeb57a816f0491a63c39a63e351f15447237 · DEBREUVE Eric / NutriMorph · GitLab

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Apr 07, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 698fdeb5
  NADAL Morgane authored 4 years ago
  
  698fdeb5
Apr 06, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 882ef02a
  NADAL Morgane authored 4 years ago
  
  882ef02a
- STEP2 = GRAPHS EXTRACTION: use SKL graph to only extract the {ext + conn} as graph · a90ec39c
  NADAL Morgane authored 4 years ago
  
  a90ec39c
Apr 04, 2020
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas... · ccebbf37
  NADAL Morgane authored 4 years ago
  
  STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root [[coord: tuple{3}, idx: int]]
  ccebbf37
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root · ed98057d
  NADAL Morgane authored 4 years ago
  
  ed98057d
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 4 years ago
  
  81f6e4a0
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 4 years ago
  
  96d784c3
- Revert "added Frangi prms + README to parameters.ini" · 5649134d
  NADAL Morgane authored 4 years ago
  
  This reverts commit efbce256
  5649134d
- added Frangi prms + README to parameters.ini · efbce256
  NADAL Morgane authored 4 years ago
  
  efbce256
Mar 24, 2020
- some refactoring + identification of an essential process for soma-ext and... · f542dbe1
  NADAL Morgane authored 5 years ago
  
  some refactoring + identification of an essential process for soma-ext and connexions : NormalizedImage()
  f542dbe1
Mar 23, 2020
- Added SKLGraph module · e2ed1660
  NADAL Morgane authored 5 years ago
  
  e2ed1660
- Fct for Maximum Intensity Projection on Z · 9ed39447
  NADAL Morgane authored 5 years ago
  
  9ed39447
Mar 20, 2020
- killed the bug leading to no ext detected (relabel fct!) · 4f7877ca
  NADAL Morgane authored 5 years ago
  
  4f7877ca
- last modif to ToPixel (usable for dist, area, volume) · 54fbde26
  NADAL Morgane authored 5 years ago
  
  54fbde26
- doc for ToPixel (only dist and area - not volume) · ed5bd077
  NADAL Morgane authored 5 years ago
  
  ed5bd077
- some modif in image_verification.py · 3d8babfa
  NADAL Morgane authored 5 years ago
  
  3d8babfa
- corrected error in ToPixel · 87d5683e
  NADAL Morgane authored 5 years ago
  
  87d5683e
Mar 19, 2020
- corrected bugs in image_verification.py · 78cca4dc
  NADAL Morgane authored 5 years ago
  
  78cca4dc
Mar 18, 2020
- moved image_verification.py (PySide2) in brick/processing · 69e65a7e
  NADAL Morgane authored 5 years ago
  
  69e65a7e
- Created PySide2 Image Verification algo (still some bugs!!) · e995b969
  NADAL Morgane authored 5 years ago
  
  e995b969
Mar 17, 2020
- dealt with parameters issues (pixel-micron + arguments in fct) + some refactoring · d84ad67e
  NADAL Morgane authored 5 years ago
  
  d84ad67e
Mar 16, 2020
- created parameters.ini file (todo: clean up) + still working on PySide2 for ImageVerification() · e82a6e87
  NADAL Morgane authored 5 years ago
  
  e82a6e87
Mar 13, 2020
- refactoring · 56c71b36
  NADAL Morgane authored 5 years ago
  
  56c71b36
- modif FindVoxelDimensionInMicrons() w/ re expression + try-except · 3b79f558
  NADAL Morgane authored 5 years ago
  
  3b79f558
- modif IntensityNormalizedImage() · 0aa2d768
  NADAL Morgane authored 5 years ago
  
  0aa2d768
- modif ImageVerification() -> no image constant + some changes in the dimension verif · 4321a9bd
  NADAL Morgane authored 5 years ago
  
  4321a9bd
Mar 11, 2020
- modified selem (in micron) in prms + in other fcts · cdcc8f12
  NADAL Morgane authored 5 years ago
  
  cdcc8f12
- modified selem (in micron) in prms + in other fcts · c753b56b
  NADAL Morgane authored 5 years ago
  
  c753b56b
- fct for intensity normalization and find voxel dimension in micron + refractoring · a7220a24
  NADAL Morgane authored 5 years ago
  
  a7220a24
Mar 10, 2020
- wrote fct for relative intensity image normalization + refractoring · baae4068
  NADAL Morgane authored 5 years ago
  
  baae4068
Mar 09, 2020
- changed label into relabel + max - modified Filtered Maps · 3ff4cecf
  NADAL Morgane authored 5 years ago
  
  3ff4cecf
- Added the dijkstra and frangi algo (not the link). · 7745e79b
  NADAL Morgane authored 5 years ago
  
  Added an algorithm for the verification for image dimension and coherence with the parameter channel. No user interface yet because of a bug in PySide2.
  7745e79b
- added Morgane as contributor · d1519363
  DEBREUVE Eric authored 5 years ago
  
  d1519363
Mar 08, 2020
- refactoring · 445f2be8
  DEBREUVE Eric authored 5 years ago
  
  445f2be8
Mar 06, 2020
- recfactoring · 2e524b41
  DEBREUVE Eric authored 5 years ago
  
  2e524b41
Feb 26, 2020
- some refactoring · 3fbfbea8
  DEBREUVE Eric authored 5 years ago
  
  3fbfbea8
Jan 07, 2020
- moved frangi in independent folder · 128b8951
  DEBREUVE Eric authored 5 years ago
  
  128b8951
Dec 13, 2019
- reorg + preliminary c-based frangi · 3b8c5fc0
  DEBREUVE Eric authored 5 years ago
  
  3b8c5fc0