Commits · 62d76ae306b87b295a9099318a5a449fff93e74a · DEBREUVE Eric / NutriMorph

Jun 12, 2020
- Format update: NutriMorph can be run on a file or on multiple files within repositories · 62d76ae3
  NADAL Morgane authored 4 years ago
  
  62d76ae3
- update: prm differenciation mode in frangi --> indirect · 5256359b
  NADAL Morgane authored 4 years ago
  
  5256359b
- update: thinning after skeletonization in nutrimorph.py and skl_map.py · 986ed789
  NADAL Morgane authored 4 years ago
  
  986ed789
- small correction · 40ccd520
  NADAL Morgane authored 4 years ago
  
  40ccd520
Jun 11, 2020
- Annotated the whole Nutrimorph script, except specific fcts in Frangi, Dijkstra and SKLGraph. · d4054214
  NADAL Morgane authored 4 years ago
  
  d4054214
Jun 08, 2020
- some modifs · 4cadf915
  NADAL Morgane authored 4 years ago
  
  4cadf915
- delete too big somas · 5a3fbfdc
  NADAL Morgane authored 4 years ago
  
  + under dev: delete too big extensions
  5a3fbfdc
Jun 05, 2020
- solved hysteresis bug - still in dvpt · c7b23f47
  NADAL Morgane authored 4 years ago
  
  c7b23f47
- working on hysteresis bug · 4a5d39df
  NADAL Morgane authored 4 years ago
  
  4a5d39df
May 18, 2020
- cleaning · 67980fc4
  NADAL Morgane authored 4 years ago
  
  67980fc4
May 14, 2020
- bugs correction · 8105237d
  NADAL Morgane authored 4 years ago
  
  8105237d
May 07, 2020
- dealt with hysteresis pb + added features: · a09e72c6
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  a09e72c6
May 04, 2020
- pandas df + length in micron + reorganisation of the code · f4675835
  NADAL Morgane authored 4 years ago
  
  f4675835
Apr 27, 2020
- some corrections · 57c59876
  NADAL Morgane authored 4 years ago
  
  57c59876
- added soma features (volume + working on best fitting ellipsoid axes) +... · 09937e58
  NADAL Morgane authored 4 years ago
  
  added soma features (volume + working on best fitting ellipsoid axes) + modified skl brick.edge algo to support None value for calculus of edge lengths
  09937e58
Apr 23, 2020
- changed __slots__ initialization · 306a2ae6
  NADAL Morgane authored 4 years ago
  
  306a2ae6
- changed __slots__ initialization · c2da34ac
  NADAL Morgane authored 4 years ago
  
  c2da34ac
Apr 22, 2020
- some corrections · 15c95e8f
  NADAL Morgane authored 4 years ago
  
  15c95e8f
Apr 20, 2020
- possibility to use Dijkstra from skimage BUT time x 10 · 905b5135
  NADAL Morgane authored 4 years ago
  
  905b5135
- possibility to use Dijkstra from skimage BUT time x 10 · 3b8807be
  NADAL Morgane authored 4 years ago
  
  3b8807be
Apr 17, 2020
- smal correction · 72ba3dea
  NADAL Morgane authored 4 years ago
  
  72ba3dea
Apr 16, 2020
- Graphs constructed - for the moment, use FindRootsWithNodes instead of FindRootsWithEdges · 5da5797f
  NADAL Morgane authored 4 years ago
  
  5da5797f
- clean the root search associated-codes · b5fec106
  NADAL Morgane authored 4 years ago
  
  b5fec106
Apr 15, 2020
- added field centroid to soma · 7de498e0
  NADAL Morgane authored 4 years ago
  
  7de498e0
Apr 09, 2020
- tests for skimage.graph · cb7a3dd3
  NADAL Morgane authored 4 years ago
  
  cb7a3dd3
Apr 08, 2020
- Step3 : added the soma and ext id to root node attributes · 856559c7
  NADAL Morgane authored 4 years ago
  
  + nutrimorph.py setting
  856559c7
Apr 04, 2020
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas... · ccebbf37
  NADAL Morgane authored 4 years ago
  
  STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root [[coord: tuple{3}, idx: int]]
  ccebbf37
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root · ed98057d
  NADAL Morgane authored 4 years ago
  
  ed98057d
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 5 years ago
  
  96d784c3
Mar 17, 2020
- dealt with parameters issues (pixel-micron + arguments in fct) + some refactoring · d84ad67e
  NADAL Morgane authored 5 years ago
  
  d84ad67e
Mar 13, 2020
- refactoring · 56c71b36
  NADAL Morgane authored 5 years ago
  
  56c71b36
Mar 11, 2020
- modified selem (in micron) in prms + in other fcts · c753b56b
  NADAL Morgane authored 5 years ago
  
  c753b56b
Mar 09, 2020
- changed label into relabel + max - modified Filtered Maps · 3ff4cecf
  NADAL Morgane authored 5 years ago
  
  3ff4cecf
- added Morgane as contributor · d1519363
  DEBREUVE Eric authored 5 years ago
  
  d1519363
Mar 08, 2020
- refactoring · 445f2be8
  DEBREUVE Eric authored 5 years ago
  
  445f2be8
Mar 06, 2020
- recfactoring · 2e524b41
  DEBREUVE Eric authored 5 years ago
  
  2e524b41
Feb 26, 2020
- some refactoring · 3fbfbea8
  DEBREUVE Eric authored 5 years ago
  
  3fbfbea8
Jan 07, 2020
- moved frangi in independent folder · 128b8951
  DEBREUVE Eric authored 5 years ago
  
  128b8951
Dec 13, 2019
- reorg + preliminary c-based frangi · 3b8c5fc0
  DEBREUVE Eric authored 5 years ago
  
  3b8c5fc0