Commits · 1b41ed0ed6138d4a4774dc0a5af3530bcc2c3d0e · DEBREUVE Eric / NutriMorph

Mar 11, 2021
- added basic soma validation interface · 1b41ed0e
  DEBREUVE Eric authored 4 years ago
  
  1b41ed0e
Feb 03, 2021
- adaptation to local env · 2e57a10e
  DEBREUVE Eric authored 4 years ago
  
  2e57a10e
Jul 23, 2020
- small corrections · 6c2466b6
  NADAL Morgane authored 4 years ago
  
  6c2466b6
Jul 06, 2020
- improved features_analysis.py and add new parameter to nutrimorph.py · 7b24a676
  NADAL Morgane authored 4 years ago
  
  7b24a676
Jul 03, 2020
- usable version of dilatation/erosion during connexion of extensions · 44e96ffb
  NADAL Morgane authored 4 years ago
  
  44e96ffb
Jul 01, 2020
- dvpt of algo helping feature selection · e1cccbf8
  NADAL Morgane authored 4 years ago
  
  e1cccbf8
Jun 30, 2020
- small correction to delete NaN in pd df · 98cd4399
  NADAL Morgane authored 4 years ago
  
  98cd4399
Jun 29, 2020
- usable version with choice btw w or wo dilatation/erosion. · df243383
  NADAL Morgane authored 4 years ago
  
  For the moment, more relevant results (biologically speaking) without dilatation/erosion.
  df243383
Jun 26, 2020

EROSION/DILATATION during connexion: added possibility to choose between 2... · c5b6acb2

NADAL Morgane authored 4 years ago

EROSION/DILATATION during connexion: added possibility to choose between 2 erosion conditions. The strict one seems to be best (strict_erosion=True)

c5b6acb2

Jun 25, 2020
- solved EROSION/DILATATION bug · 1e026ed9
  NADAL Morgane authored 4 years ago
  
  1e026ed9
Jun 24, 2020
- modif · 685f23fe
  NADAL Morgane authored 4 years ago
  
  685f23fe
- some modifs + new prms · 4e8095db
  NADAL Morgane authored 4 years ago
  
  4e8095db
Jun 23, 2020
- minor modifications · 2b2747d4
  NADAL Morgane authored 4 years ago
  
  2b2747d4
- improve interface & prms · 2a162674
  NADAL Morgane authored 4 years ago
  
  2a162674
- add try/except for better dvpt · ae39797d
  NADAL Morgane authored 4 years ago
  
  ae39797d
Jun 22, 2020

solved BIG BUG: tangency of extensions and connexions leading to... · 9f4cdf48

NADAL Morgane authored 4 years ago

solved BIG BUG: tangency of extensions and connexions leading to "deskeletonization" and sklgraph incoherence with python objects

9f4cdf48

Jun 17, 2020
- solved BUG: free ext in cell graph · 0ac4c20d
  NADAL Morgane authored 4 years ago
  
  0ac4c20d
Jun 12, 2020
- Format update: NutriMorph can be run on a file or on multiple files within repositories · 62d76ae3
  NADAL Morgane authored 4 years ago
  
  62d76ae3
- update: prm differenciation mode in frangi --> indirect · 5256359b
  NADAL Morgane authored 4 years ago
  
  5256359b
- update: thinning after skeletonization in nutrimorph.py and skl_map.py · 986ed789
  NADAL Morgane authored 4 years ago
  
  986ed789
- small correction · 40ccd520
  NADAL Morgane authored 4 years ago
  
  40ccd520
Jun 11, 2020
- Annotated the whole Nutrimorph script, except specific fcts in Frangi, Dijkstra and SKLGraph. · d4054214
  NADAL Morgane authored 4 years ago
  
  d4054214
Jun 08, 2020
- some modifs · 4cadf915
  NADAL Morgane authored 4 years ago
  
  4cadf915
- delete too big somas · 5a3fbfdc
  NADAL Morgane authored 4 years ago
  
  + under dev: delete too big extensions
  5a3fbfdc
Jun 05, 2020
- solved hysteresis bug - still in dvpt · c7b23f47
  NADAL Morgane authored 4 years ago
  
  c7b23f47
- working on hysteresis bug · 4a5d39df
  NADAL Morgane authored 4 years ago
  
  4a5d39df
May 18, 2020
- possibility to choose the boundaries for the histograms · 24399934
  NADAL Morgane authored 4 years ago
  
  24399934
- cleaning · 67980fc4
  NADAL Morgane authored 4 years ago
  
  67980fc4
May 14, 2020
- bugs correction · 8105237d
  NADAL Morgane authored 4 years ago
  
  8105237d
- errors correction - graph features extraction completed · 1c3e0601
  NADAL Morgane authored 4 years ago
  
  1c3e0601
May 12, 2020
- errors correction - graph features extraction completed · 8ca33894
  NADAL Morgane authored 4 years ago
  
  8ca33894
May 11, 2020
- curvature and torsion coorection + lengths of edges in micron · cb4c0cbb
  NADAL Morgane authored 4 years ago
  
  cb4c0cbb
- curvature and torsion done · d832a4a9
  NADAL Morgane authored 4 years ago
  
  d832a4a9
May 07, 2020
- dealt with hysteresis pb + added features: · 6e2a11eb
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  6e2a11eb
- dealt with hysteresis pb + added features: · a09e72c6
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  a09e72c6
May 05, 2020
- added hist lengths and thickness features · 1a094725
  NADAL Morgane authored 4 years ago
  
  1a094725
May 04, 2020
- pandas df + length in micron + reorganisation of the code · 8b57e569
  NADAL Morgane authored 4 years ago
  
  8b57e569
- pandas df + length in micron + reorganisation of the code · f4675835
  NADAL Morgane authored 4 years ago
  
  f4675835
Apr 30, 2020
- some corrections on features and functions · 45ff36f0
  NADAL Morgane authored 4 years ago
  
  45ff36f0
Apr 29, 2020
- improved extensions lengths hist · 4d255a79
  NADAL Morgane authored 4 years ago
  
  4d255a79