parameters.ini

# Copyright CNRS/Inria/UNS
# Contributor(s): Eric Debreuve (since 2019), Morgane Nadal (2020)
#
# eric.debreuve@cnrs.fr
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# TODO: Use the .ini file instead of the .py file
[Input]
data_path:                  "./data/DIO_6H_6_1.70bis_2.2_3.tif"
channel:                    'G'
size_voxel_in_micron:       None
# -> list [X,Y,Z]

[Somas]
soma_low_c:                 0.15
soma_high_c:                0.7126
soma_selem_micron_c:        0.24050024 * 2
# soma_selem_c = mp_.disk(2)
soma_min_area_c:            0.24050024 * 1000
;soma_min_area_c:            1000

[Extensions]
ext_low_c:                  0.2
# 0.02  # 0.2  # ext_low_c = 9.0e-4
ext_high_c:                 0.6
# 0.04  # 0.6  # high_ext = 8.0e-3
ext_selem_micron_c:         0.24050024 * 1
# ext_selem_c = mp_.disk(1)
ext_min_area_c:             0.24050024 * 100
;ext_min_area_c:             100  # pixels

[Connexions]
max_straight_sq_dist_c:     (30 ** 2) * 0.24050024
max_weighted_length_c:      20.0 * 0.24050024

[Program Running]
with_plot:                  True
in_parallel:                False