• Mikaël Salson's avatar
    algo/: Refactor Fasta to BioReader · 3d8ff242
    Mikaël Salson authored
    We now have an abstract class to deal with biological sequence files. This
    will allow to more easily manage different file types.
    
    This commit only reorganizes the code so that we will be able to add a BAM
    reader easily. Functionnally the code should be equivalent to its previous
    version.
    
    Some functions that were not used have been removed.
    
    The operator>> has been removed as it was only used in unit testing. This
    operator is not convenient as having the filename may be useful to reopen the
    file or to know its extension, to guess the filetype.
    
    See #2016
    3d8ff242
sequenceSampler.h 1.67 KB