Algo 2017.03

2017-03-14  The Vidjil Team
        * Better support for germlines from several species (germlines/*.g) #1987 #2132
        * Streamlined option -g, including filtering, removed old -i/-G options (vidjil.cpp, core/germline.cpp) #2134
        * Better productivity estimation, handling in-frame stop codons (core/segment.cpp) #2220
        * Better unsegmentation causes, 'UNSEG only V/J' needs really significant V/J fragments (core/segment.cpp) #2107
        * New experimental faster heuristic with Aho-Corasick automaton (core/automaton.hpp) #1366
        * New option to disable window clustering (-w all) (core/windowExtractor.cpp) #1642
        * Updated germline genes from IMGT/GENE-DB
        * Bugs closed (json output, consensus computation, -y option) #2214 #2217 #2224 #2239
        * Refactored test structure for should-vdj tests (tests/should-vdj-to-tap.py, tests/repseq_vdj.py)
        * New and updated unit and functional tests, including more solved former bugs
        * Moved code to gitlab, better project management, commit messages are now linked to issues