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Make Vidjil read BAM file

Mikaël Salson requested to merge algo/bam_reader into dev

Fixes #2016 (closed).

The merge request doesn't include any documentation change, which could look weird. However I think this should remain a hidden feature for two reasons:

  1. A BAM file is generally obtained by aligning reads to reference sequences. This could make people think they have to align their reads beforehand.
  2. In the case of paired-end sequencing, there is only one BAM file (but two FASTQ files). So the people could provide a single BAM file where reads have not been merged.

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