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Feature a/3282 repetitive filterbioreaderwithacautomaton parts to reusable function

Merged Cyprien Borée requested to merge feature-a/3282-repetitive-filterbioreaderwithacautomaton-parts-to-reusable-function into dev

L'issue d'origine est #3282 (closed) et les tests associés dans #3312 (closed).

Fixes #3282 (closed), #3312 (closed), #3299 (closed)

Edited by Mikaël Salson