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Similarity, add a new way to make similarity computing on AA sequence

Merged Thonier Florian requested to merge feature-c/tsne_improvement_2023_01 into dev
  • Remove tSNE without locus split.
  • Add similarity computing based on AA
  • Modify code to allow clustering of clone on AA
  • Add new preset similarity AA by locus

Close #5083 (closed)

Edited by THONIER Florian