Merge clonotype on exact VDJ sequence (excluding primers)
In some case, user upload data with primers. We have in these cases mix of primer of various length able to be used for a same clonotype. And in some configuration (no-clustering), we saw 2 clonotypes or more that are an artefact.
As position and size of primer can vary, we can't make only a trimming of it.
Can we make a merge based on sequence but limited to Vstart ?
See case here: 59910-50?clone=27,35,45,81