Vidjil-algo see a VDJ with very poor quality instead of 100% germline
This clone is seen as IGK V2D-29 /78/ J4
instead of IGLV2
with 242 nt of match (100%).
In this case, we got from vidjil poor affect values : "KKK?KKK____________K__________________K__K_____________K____________________________________________________kkkkkkkk_kk______________________________K__________________________________________"
In this case, locus IGL is search too.
Algo should be stopped if their is a better evalue for any other locus ?
Edited by THONIER Florian