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  • #4647

Closed
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Opened Jan 15, 2021 by Mathieu Giraud@magiraudOwner

Nouvelles germlines ne détectent pas IGHD7-27/J1, collision up/down avec IGHJ1P

Sur !885, on ne détecte plus le colinéaire should-get-tests/colinear-D7-27--J1.should #2232 (closed) (et #1664). On a aussi deux .should-vdj.fa sur D7-27 qui plantent, mais non liés à J1.

Cependant, la très courte séquence D7-27 (11 bp) n'a pas changé, au contraire de... notre upstream !606 (merged)

 >J00256|IGHD7-27*01|Homo sapiens|F|D-REGION|621..631|11 nt|1| | | | |11+0=11| | |
-TACCAGCCGCAGGGTTTTGGCTGAGCTGAGAACCACTGTG
+GTGTTTTGGGGCTAACAGCGGAAGGGAGAGCACTGGCAAAGGTGCTGGGGGCCCCTGGACCCGACCCGCC
+CTGGAGACCGCAGCCACATCAGCCCCCAGCCCCACAGGCCCCCTACCAGCCGCAGGGTTTTGGCTGAGCT
+GAGAACCACTGTG
 ctaactgggga

Est-ce que cela signifie que la séquence data/D7-27--J1.fa a un soucis ? Autre chose ?

Edited Jan 20, 2021 by Mathieu Giraud
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Reference: vidjil/vidjil#4647