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  • #3964

Closed
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Opened Aug 05, 2019 by Mathieu Giraud@magiraudOwner

Running MiXCR through Vidjil

Reported by @meidanis :

The first thing his analysis does is to combine R1 and R2. Shall I do this as a pre-processing step? That was my inclination, but I'm not sure the resulting file from "mixcr align" is a fastq file. Maybe it is written in some other format. How can I continue the analysis then?

Even if I continue the analysis calling mixcr again for the next step, will it produce a .vidjil file? Does it know how to do that?

Finally, is mixcr (the binary, executable) already installed in the containers?

cc @flothoni @mikael-s

To upload designs, you'll need to enable LFS and have admin enable hashed storage. More information
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Dec 20, 2019
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Dec 20, 2019
Reference: vidjil/vidjil#3964