Running MiXCR through Vidjil
Reported by @meidanis :
The first thing his analysis does is to combine R1 and R2. Shall I do this as a pre-processing step? That was my inclination, but I'm not sure the resulting file from "mixcr align" is a fastq file. Maybe it is written in some other format. How can I continue the analysis then?
Even if I continue the analysis calling mixcr again for the next step, will it produce a
.vidjilfile? Does it know how to do that?
Finally, is mixcr (the binary, executable) already installed in the containers?
To upload designs, you'll need to enable LFS and have an admin enable hashed storage. More information