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  • Mikaël Salson's avatar
    core/affectanalyser.cpp: Don't count affects that are on a plateau of max values · c0271f69
    Mikaël Salson authored
    When they were counted this biased the counter of before affects on the left part thus
    leading to unjustified UNSEG_AMBIGUOUS.
    When we are on a plateau and when affectations[i] is defined this means we have overlapping k-mers
    thus we don't count those k-mers as left affects (are they left or right? we are actually **on**
    the maximum, it is hard to tell).
    However if we happen to encounter a higher maximum those ignored values are then reaffected to the left
    Fix #3296