• Mikaël Salson's avatar
    algo: Remove smallestAnalysableLength() · 85622c02
    Mikaël Salson authored
    At first, we considered that smallestAnalysableLength() would be enough
    to deal with differences between a k-mer index and an Aho-Corasick automaton.
    This is actually not the case.
    We need to have the length of the seed together with the affectation for the
    Aho-Corasick automaton. In the end this allows to get the same affectation
    strings than with a k-mer index. This would not have been possibble with the
    smallesAnalysableLength() function and it makes it useless.
kmerstore.h 15.6 KB