Update sonar script

analysis.sh

-#!/bin/bash
+#!/usr/bin/env bash
+###
+#
+#  @file analysis.sh
+#  @copyright 2019-2021 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+#                       Univ. Bordeaux. All rights reserved.
+#
+#  @version 1.0.0
+#  @author Mathieu Faverge
+#  @date 2021-03-25
+#
+###
 
 # Performs an analysis of HQR source code:
 # - we consider to be in HQR's source code root
@@ -16,7 +27,7 @@ rm -f filelist.txt
 git ls-files | grep "\.[ch]$" > filelist.txt
 
 # Generate coverage analysis report
-lcov_cobertura.py hqr.lcov --output hqr-coverage.xml
+python3 /usr/local/lib/python3.8/dist-packages/lcov_cobertura.py hqr.lcov --output hqr-coverage.xml
 
 # to get it displayed and captured by gitlab to expose the badge on the main page
 cat ./hqr-gcov.log
@@ -38,16 +49,15 @@ cat > sonar-project.properties << EOF
 sonar.host.url=https://sonarqube.inria.fr/sonarqube
 sonar.login=$SONARQUBE_LOGIN
 
-sonar.links.homepage=https://gitlab.inria.fr/solverstack/hqr
-sonar.links.scm=https://gitlab.inria.fr/solverstack/hqr.git
-sonar.links.ci=https://gitlab.inria.fr/solverstack/hqr/pipelines
-sonar.links.issue=https://gitlab.inria.fr/solverstack/hqr/issues
+sonar.links.homepage=$CI_PROJECT_URL
+sonar.links.scm=$CI_REPOSITORY_URL
+sonar.links.ci=$CI_PROJECT_URL/pipelines
+sonar.links.issue=$CI_PROJECT_URL/issues
 
 sonar.projectKey=$SONARQUBE_PROJECTKEY
 sonar.projectDescription=Library for hierarchical QR/LQ reduction trees
 sonar.projectVersion=master
 
-sonar.language=c
 sonar.sources=include, src, testings
 sonar.inclusions=`cat filelist.txt | xargs echo | sed 's/ /, /g'`
 sonar.sourceEncoding=UTF-8
@@ -59,7 +69,10 @@ sonar.c.compiler.reportPath=hqr-build.log
 sonar.c.coverage.reportPath=hqr-coverage.xml
 sonar.c.cppcheck.reportPath=hqr-cppcheck.xml
 sonar.c.rats.reportPath=hqr-rats.xml
-sonar.c.jsonCompilationDatabase=build/compile_commands.json
+sonar.c.jsonCompilationDatabase=${BUILDDIR}/compile_commands.json
+sonar.lang.patterns.c++: **/*.cxx,**/*.cpp,**/*.cc,**/*.hxx,**/*.hpp,**/*.hh
+sonar.lang.patterns.c: **/*.c,**/*.h
+sonar.lang.patterns.python: **/*.py
 EOF
 
 # run sonar analysis + publish on sonarqube-dev