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ScalFMM
Commit 3d69eea7 authored by Martin Khannouz's avatar Martin Khannouz Committed by Berenger Bramas
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Re do jobs structure. 

Now there is one script per algorithm and kernel.
The number of node and particles are handle before.
Plus, job scripts load envirronement from a script on plafrim.
parent fcb2fc68
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jobs/explicit_10N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J explicit_50M_10N
#SBATCH -p special
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 10
#SBATCH -c 24
#SBATCH --time=00:30:00
# # output error message
#SBATCH -e explicit_chebyshev_50M_10_node%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=5000000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: explicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedMpiChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/explicit_1N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J explicit_50M_1N
#SBATCH -p defq
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 1
#SBATCH -c 24
#SBATCH --time=02:00:00
# # output error message
#SBATCH -e explicit_chebyshev_50M_10_node%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=50000000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: explicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedMpiChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/explicit_2N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J explicit_50M_2N
#SBATCH -p court
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 2
#SBATCH -c 24
#SBATCH --time=04:00:00
# # output error message
#SBATCH -e explicit_50M_2N_%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=25000000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: explicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedMpiChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/explicit_4N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J explicit_50M_4N
#SBATCH -p court
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 4
#SBATCH -c 24
#SBATCH --time=04:00:00
# # output error message
#SBATCH -e explicit_chebyshev_50M_10_node%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=12500000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: explicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedMpiChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/explicit_8N_chebyshev.sh → jobs/explicit_chebyshev.sh
View file @ 3d69eea7
#!/usr/bin/env bash
## name of job
#SBATCH -J explicit_50M_8N
#SBATCH -J explicit
#SBATCH -p special
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 8
#SBATCH -c 24
#SBATCH --time=00:30:00
# # output error message
#SBATCH -e explicit_50M_8N%j.err
#SBATCH -e explicit_%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
source $HOME/env.sh
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=6250000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
export STARPU_WATCHDOG_TIMEOUT=20000000
export STARPU_WATCHDOG_CRASH=1
NUMACTL="numactl --interleave=all"
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
......@@ -36,9 +30,8 @@ echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: explicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedMpiChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
echo "Total particles: " $NB_PARTICLE >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedMpiChebyshev -nb $NB_PARTICLE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout 2>&1
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
......@@ -53,4 +46,3 @@ cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/implicit_10N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J implicit_50M_10N
#SBATCH -p special
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 10
#SBATCH -c 24
#SBATCH --time=00:30:00
# # output error message
#SBATCH -e implicit_chebyshev_50M_10_node%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=5000000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: implicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedImplicitChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/implicit_1N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J implicit_50M_1N
#SBATCH -p defq
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 1
#SBATCH -c 24
#SBATCH --time=02:00:00
# # output error message
#SBATCH -e implicit_chebyshev_50M_10_node%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=50000000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: implicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedImplicitChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/implicit_2N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J implicit_50M_2N
#SBATCH -p special
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 2
#SBATCH -c 24
#SBATCH --time=00:30:00
# # output error message
#SBATCH -e implicit_50M_2N_%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=25000000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: implicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedImplicitChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/implicit_4N_chebyshev.sh deleted 100644 → 0
View file @ fcb2fc68
#!/usr/bin/env bash
## name of job
#SBATCH -J implicit_50M_4N
#SBATCH -p special
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 4
#SBATCH -c 24
#SBATCH --time=00:30:00
# # output error message
#SBATCH -e implicit_chebyshev_50M_10_node%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=12500000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
echo "Nb node: " $NB_NODE >> $FINAL_DIR/stdout
echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: implicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedImplicitChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
list_fxt_file=`ls ../$STARPU_FXT_PREFIX*`
#Clean to only keep trace.rec
mkdir fxt
for i in $list_fxt_file; do
mv $i fxt
done
cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/implicit_8N_chebyshev.sh → jobs/implicit_chebyshev.sh
View file @ 3d69eea7
#!/usr/bin/env bash
## name of job
#SBATCH -J implicit_50M_8N
#SBATCH -J implicit
#SBATCH -p special
## Resources: (nodes, procs, tasks, walltime, ... etc)
#SBATCH -N 8
#SBATCH -c 24
#SBATCH --time=00:30:00
# # output error message
#SBATCH -e implicit_50M_8N_%j.err
#SBATCH -e implicit_%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
source $HOME/env.sh
## variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
export NB_NODE=$SLURM_JOB_NUM_NODES
export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=6250000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_COMM_STATS=1
$NUMACTL=numactl --interleave=all
export STARPU_WATCHDOG_TIMEOUT=20000000
export STARPU_WATCHDOG_CRASH=1
NUMACTL="numactl --interleave=all"
mkdir $FINAL_DIR
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
echo "Model: cube" >> $FINAL_DIR/stdout
......@@ -36,9 +30,8 @@ echo "Nb thread: " $STARPU_NCPU >> $FINAL_DIR/stdout
echo "Tree height: " $TREE_HEIGHT >> $FINAL_DIR/stdout
echo "Group size: " $GROUP_SIZE >> $FINAL_DIR/stdout
echo "Algorithm: implicit" >> $FINAL_DIR/stdout
echo "Particle per node: " $NB_PARTICLE_PER_NODE >> $FINAL_DIR/stdout
echo "Total particles: " $(($NB_PARTICLE_PER_NODE*$NB_NODE)) >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedImplicitChebyshev -nb $NB_PARTICLE_PER_NODE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout
echo "Total particles: " $NB_PARTICLE >> $FINAL_DIR/stdout
mpiexec -n $NB_NODE $NUMACTL ./Build/Tests/Release/testBlockedImplicitChebyshev -nb $NB_PARTICLE -bs $GROUP_SIZE -h $TREE_HEIGHT -no-validation >> $FINAL_DIR/stdout 2>&1
#Create argument list for starpu_fxt_tool
cd $FINAL_DIR
......@@ -53,4 +46,3 @@ cd ..
##Move the result into a directory where all result goes
mv $FINAL_DIR jobs_result
jobs/starpu_chebyshev.sh
View file @ 3d69eea7
......@@ -11,14 +11,8 @@
#SBATCH -e starpu_50M_%j.err
#SBATCH --mail-type=END,FAIL,TIME_LIMIT --mail-user=martin.khannouz@inria.fr
## modules to load for the job
module purge
module load slurm
module add compiler/gcc/5.3.0 tools/module_cat/1.0.0 intel/mkl/64/11.2/2016.0.0
. /home/mkhannou/spack/share/spack/setup-env.sh
spack load fftw
spack load hwloc
spack load openmpi
spack load starpu@svn-trunk+fxt
source $HOME/env.sh
##Setting variable for the job
export GROUP_SIZE=500
export TREE_HEIGHT=8
......@@ -27,8 +21,10 @@ export STARPU_NCPU=24
export NB_PARTICLE_PER_NODE=50000000
export STARPU_FXT_PREFIX=$SLURM_JOB_ID
export FINAL_DIR="`pwd`/dir_$SLURM_JOB_ID"
export STARPU_WATCHDOG_TIMEOUT=20000000
export STARPU_WATCHDOG_CRASH=1
mkdir $FINAL_DIR
$NUMACTL=numactl --interleave=all
NUMACTL="numactl --interleave=all"
## Write data into an stdout file
echo "my jobID: " $SLURM_JOB_ID > $FINAL_DIR/stdout
......
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