alignment of cultivar on the reference is not well sorted.
Files: AdHoc/integrateCultivarAssemblies.sh
descr:
$ zcat $cul.tsv.gz | starch -
ERROR: BED data is not properly sorted by end coordinates (when start coordinates are equal) at line 158
#chrA02 873251 876958 scaffold_15942 3694 1
#chrA02 873251 874437 scaffold_82262 1 1187
The output file is not well sorted.
When start are equals, it should be then sort on the end.