A GitLab upgrade is scheduled for Monday, June 2, 2025. The service will be unavailable for a few minutes in the morning. We'll keep you posted on the progress of the upgrade on the Mattermost channel: https://mattermost.inria.fr/devel/channels/gitlab. We recommend that you do not work on the platform until an announcement indicates that maintenance is complete.
The code in this repository is described in [this pre-print](https://www.biorxiv.org/content/10.1101/2020.04.15.042747v1). This paper has been submitted to Nature Methods and is currently under revision.
__Disclaimer:__ this is a preliminary version of the code, which is subject to improvements. For ease of use, we also plan to create a graphical interface in forthcoming months.
__To reviewers__: you can follow our [tutorial](https://deepfinder.readthedocs.io/en/latest/tutorial.html) to reproduce segmentations from our paper.
__Disclaimer:__ DeepFinder is still in its early stages, any feedback is welcome for enhancing the user experience.
__News__: (29/01/20) A first version of the GUI is now available in folder pyqt/. [More information...](###Using the GUI)
