Merge branch 'cli-options'
Conflicts: src/post_treatments/Makefile.am src/post_treatments/fixed_mutations.cpp src/post_treatments/mutationalrobustness.cpp
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- .gitignore 3 additions, 4 deletions.gitignore
- configure.ac 8 additions, 8 deletionsconfigure.ac
- doc/Makefile.am 3 additions, 3 deletionsdoc/Makefile.am
- doc/aevol_create.1 9 additions, 13 deletionsdoc/aevol_create.1
- doc/aevol_misc_ancestor_robustness.1 57 additions, 0 deletionsdoc/aevol_misc_ancestor_robustness.1
- doc/aevol_misc_ancestor_stats.1 16 additions, 12 deletionsdoc/aevol_misc_ancestor_stats.1
- doc/aevol_misc_create_eps.1 16 additions, 12 deletionsdoc/aevol_misc_create_eps.1
- doc/aevol_misc_extract.1 20 additions, 21 deletionsdoc/aevol_misc_extract.1
- doc/aevol_misc_lineage.1 23 additions, 14 deletionsdoc/aevol_misc_lineage.1
- doc/aevol_misc_mutagenesis.1 1 addition, 1 deletiondoc/aevol_misc_mutagenesis.1
- doc/aevol_misc_robustness.1 19 additions, 22 deletionsdoc/aevol_misc_robustness.1
- doc/aevol_misc_view.1 12 additions, 10 deletionsdoc/aevol_misc_view.1
- doc/aevol_modify.1 8 additions, 8 deletionsdoc/aevol_modify.1
- doc/aevol_propagate.1 18 additions, 48 deletionsdoc/aevol_propagate.1
- doc/aevol_run.1 17 additions, 11 deletionsdoc/aevol_run.1
- doc/user_guide/3_using_aevol.tex 2 additions, 2 deletionsdoc/user_guide/3_using_aevol.tex
- examples/workflow/README 5 additions, 5 deletionsexamples/workflow/README
- m4/ax_boost_base.m4 285 additions, 0 deletionsm4/ax_boost_base.m4
- m4/ax_boost_filesystem.m4 118 additions, 0 deletionsm4/ax_boost_filesystem.m4
- m4/ax_boost_system.m4 121 additions, 0 deletionsm4/ax_boost_system.m4
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