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Created with Raphaël 2.2.023Jul1563130Jun292625242322171512118520May1814121175430Apr2928272423222017161514109876426Mar25242321201918171613111098626Feb4315Jan1413713Dec6415Oct130Sep191229Augsmall correctionsmastermastersmall correctionsnew plotting options to discriminate features based on the kmeans clustersnew plotting options to discriminate features based on the kmeans clustersimproved features_analysis.py and add new parameter to nutrimorph.pyusable version of dilatation/erosion during connexion of extensionsdvpt of algo helping feature selectiondvpt of algo helping feature selectionPCA and KMeans functionaldvpt pcasmall correction to delete NaN in pd dfusable version with choice btw w or wo dilatation/erosion.EROSION/DILATATION during connexion: added possibility to choose between 2 erosion conditions. The strict one seems to be best (strict_erosion=True)solved bug: singular matrices in best fitting ellipsoidsolved EROSION/DILATATION bughandle singular matricesmodifsome modifs + new prmsdvpt of the statistical and clustering analysis algosadded soma uid to feature dfminor modificationschange the output dataframe to ease statistical analysisimprove interface & prmsadd try/except for better dvptsolved BIG BUG: tangency of extensions and connexions leading to "deskeletonization" and sklgraph incoherence with python objectssolved BUG: free ext in cell graphBefore_Dilatati…Before_Dilatation_erosionsolved soma_volume/convex_hull_volume issuesolved soma_volume/convex_hull_volume issueFormat update: NutriMorph can be run on a file or on multiple files within repositoriesupdate: prm differenciation mode in frangi --> indirectupdate frangi3D + gui interface for frangi parameter determinationBug_graphs_with…Bug_graphs_with_badly_or_un_connected_extupdate: thinning after skeletonization in nutrimorph.py and skl_map.pysmall correctionAnnotated the whole Nutrimorph script, except specific fcts in Frangi, Dijkstra and SKLGraph.some modifsdelete too big somassolved hysteresis bug - still in dvptworking on hysteresis bugsolved ellipsoid axes order issuecleaning