Commits · 31430730d5c90ae096bab52bf6948ea599abdd66 · NADAL Morgane / NutriMorph · GitLab

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Apr 09, 2020
- Merge remote-tracking branch 'origin/master' · 31430730
  NADAL Morgane authored 5 years ago
  
  31430730
- small annotations · 54b1d162
  NADAL Morgane authored 5 years ago
  
  54b1d162
- Merge branch 'Create_graphs' into 'master' · a7ba23c5
  NADAL Morgane authored 5 years ago
  a7ba23c5
- Changed MIP fct (not using SimpleITK anymore) · 801bc197
  NADAL Morgane authored 5 years ago
  
  801bc197
Apr 08, 2020
- Step3 : added the soma and ext id to root node attributes · 856559c7
  NADAL Morgane authored 5 years ago
  856559c7
- Step3 : FindGraphRoots finds False and True roots + added as node attribute · 7bea0236
  NADAL Morgane authored 5 years ago
  
  7bea0236
Apr 07, 2020
- bugs in graph root extration · 9322587c
  NADAL Morgane authored 5 years ago
  
  9322587c
- STEP3 = find and label the root extremities of the ext+conn graphs · 698fdeb5
  NADAL Morgane authored 5 years ago
  
  698fdeb5
Apr 06, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 882ef02a
  NADAL Morgane authored 5 years ago
  
  882ef02a
- STEP2 = GRAPHS EXTRACTION: use SKL graph to only extract the {ext + conn} as graph · a90ec39c
  NADAL Morgane authored 5 years ago
  
  a90ec39c
Apr 04, 2020
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas... · ccebbf37
  NADAL Morgane authored 5 years ago
  ccebbf37
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root · ed98057d
  NADAL Morgane authored 5 years ago
  
  ed98057d
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 5 years ago
  
  81f6e4a0
Mar 25, 2020
- some modifs · 3efcfd07
  NADAL Morgane authored 5 years ago
  
  3efcfd07
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 5 years ago
  
  96d784c3
- Merge branch 'revert-efbce256 ' into 'master' · 74ada082
  NADAL Morgane authored 5 years ago
  74ada082
- Revert "added Frangi prms + README to parameters.ini" · 5649134d
  NADAL Morgane authored 5 years ago
  5649134d
- added Frangi prms + README to parameters.ini · efbce256
  NADAL Morgane authored 5 years ago
  
  efbce256
Mar 24, 2020
- some refactoring + added sklgraph · 7fef4f65
  NADAL Morgane authored 5 years ago
  
  7fef4f65
- some refactoring + identification of an essential process for soma-ext and... · f542dbe1
  NADAL Morgane authored 5 years ago
  f542dbe1
Mar 23, 2020
- some minor modifications · e70f8f49
  NADAL Morgane authored 5 years ago
  
  e70f8f49
- Added SKLGraph module · e2ed1660
  NADAL Morgane authored 5 years ago
  
  e2ed1660
- Fct for Maximum Intensity Projection on Z · 9ed39447
  NADAL Morgane authored 5 years ago
  
  9ed39447
- parameters.py -> search_parameters.py: search parameters from.INI file · 22f5113c
  NADAL Morgane authored 5 years ago
  
  22f5113c
Mar 21, 2020
- Used configparser to link parameters.ini to nutrimorph.py · 066dfc31
  NADAL Morgane authored 5 years ago
  
  066dfc31
- Used configparser to link parameters.ini to nutrimorph.py · 76d5eb83
  NADAL Morgane authored 5 years ago
  
  76d5eb83
Mar 20, 2020
- killed the bug leading to no ext detected (relabel fct!) · 4f7877ca
  NADAL Morgane authored 5 years ago
  
  4f7877ca
- last modif to ToPixel (usable for dist, area, volume) · 54fbde26
  NADAL Morgane authored 5 years ago
  
  54fbde26
- doc for ToPixel (only dist and area - not volume) · ed5bd077
  NADAL Morgane authored 5 years ago
  
  ed5bd077
- some modif in image_verification.py · 3d8babfa
  NADAL Morgane authored 5 years ago
  
  3d8babfa
- corrected error in ToPixel · 87d5683e
  NADAL Morgane authored 5 years ago
  
  87d5683e
Mar 19, 2020
- corrected bugs in image_verification.py · 78cca4dc
  NADAL Morgane authored 5 years ago
  
  78cca4dc
Mar 18, 2020
- moved image_verification.py (PySide2) in brick/processing · 69e65a7e
  NADAL Morgane authored 5 years ago
  
  69e65a7e
- Created PySide2 Image Verification algo (still some bugs!!) · e995b969
  NADAL Morgane authored 5 years ago
  
  e995b969
- Created PySide2 Image Verification algo (still some bugs!!) · 56ee3805
  NADAL Morgane authored 5 years ago
  
  56ee3805
Mar 17, 2020
- dealt with parameters issues (pixel-micron + arguments in fct) + some refactoring · d84ad67e
  NADAL Morgane authored 5 years ago
  
  d84ad67e
Mar 16, 2020
- created parameters.ini file (todo: clean up) + still working on PySide2 for ImageVerification() · 110f487c
  NADAL Morgane authored 5 years ago
  
  110f487c
- created parameters.ini file (todo: clean up) + still working on PySide2 for ImageVerification() · e82a6e87
  NADAL Morgane authored 5 years ago
  
  e82a6e87
Mar 13, 2020
- refactoring · 56c71b36
  NADAL Morgane authored 5 years ago
  
  56c71b36
- modif FindVoxelDimensionInMicrons() w/ re expression + try-except · 3b79f558
  NADAL Morgane authored 5 years ago
  
  3b79f558